Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29h23
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   251   5e-69
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   251   5e-69
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.85 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  251 bits (614), Expect = 5e-69
 Identities = 120/156 (76%), Positives = 132/156 (84%), Gaps = 1/156 (0%)
 Frame = +3

Query: 195 FLKDFLAGGISAAISKTAVAPIERVKLILQVQHVSKQISEDKRYKGMVDAFVRIPKEQGF 374
           F KDFLAGG++AAISKT VAPIERVKL+LQVQH+SKQISE++RYKGM+D FVRIPKEQGF
Sbjct: 10  FAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGF 69

Query: 375 LSFWRGNLANVIRYFPTQALNFAFKDVYKGIFLEGVDKNKQFWRHFXXXXXXXXXXXXTS 554
           LS+WRGNLANVIRYFPTQALNFAFKD YK +FL GVDKN QF R+F            TS
Sbjct: 70  LSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATS 129

Query: 555 LCFVYPLDFARTRLAADVGK-GKDKEFTGLVNCLIK 659
           LCFVYPLDFARTRLAADVGK G ++EFTGL NCL K
Sbjct: 130 LCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTK 165



 Score = 31.1 bits (67), Expect = 0.010
 Identities = 33/144 (22%), Positives = 55/144 (38%)
 Frame = +3

Query: 195 FLKDFLAGGISAAISKTAVAPIERVKLILQVQHVSKQISEDKRYKGMVDAFVRIPKEQGF 374
           F+ +  +GG + A S   V P++  +  L    V K   E + + G+ +   +I K  G 
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGE-REFTGLGNCLTKIFKADGI 172

Query: 375 LSFWRGNLANVIRYFPTQALNFAFKDVYKGIFLEGVDKNKQFWRHFXXXXXXXXXXXXTS 554
              +RG   +V      +A  F F D  +G+  +   K   F   +             S
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPFLISWGIAQVVTTVAGIVS 230

Query: 555 LCFVYPLDFARTRLAADVGKGKDK 626
               YP D  R R+    G+ K +
Sbjct: 231 ----YPFDTVRRRMMMQSGRAKSE 250


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  251 bits (614), Expect = 5e-69
 Identities = 120/156 (76%), Positives = 132/156 (84%), Gaps = 1/156 (0%)
 Frame = +3

Query: 195 FLKDFLAGGISAAISKTAVAPIERVKLILQVQHVSKQISEDKRYKGMVDAFVRIPKEQGF 374
           F KDFLAGG++AAISKT VAPIERVKL+LQVQH+SKQISE++RYKGM+D FVRIPKEQGF
Sbjct: 10  FAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGF 69

Query: 375 LSFWRGNLANVIRYFPTQALNFAFKDVYKGIFLEGVDKNKQFWRHFXXXXXXXXXXXXTS 554
           LS+WRGNLANVIRYFPTQALNFAFKD YK +FL GVDKN QF R+F            TS
Sbjct: 70  LSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATS 129

Query: 555 LCFVYPLDFARTRLAADVGK-GKDKEFTGLVNCLIK 659
           LCFVYPLDFARTRLAADVGK G ++EFTGL NCL K
Sbjct: 130 LCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTK 165



 Score = 31.1 bits (67), Expect = 0.010
 Identities = 33/144 (22%), Positives = 55/144 (38%)
 Frame = +3

Query: 195 FLKDFLAGGISAAISKTAVAPIERVKLILQVQHVSKQISEDKRYKGMVDAFVRIPKEQGF 374
           F+ +  +GG + A S   V P++  +  L    V K   E + + G+ +   +I K  G 
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGE-REFTGLGNCLTKIFKADGI 172

Query: 375 LSFWRGNLANVIRYFPTQALNFAFKDVYKGIFLEGVDKNKQFWRHFXXXXXXXXXXXXTS 554
              +RG   +V      +A  F F D  +G+  +   K   F   +             S
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPFLISWGIAQVVTTVAGIVS 230

Query: 555 LCFVYPLDFARTRLAADVGKGKDK 626
               YP D  R R+    G+ K +
Sbjct: 231 ----YPFDTVRRRMMMQSGRAKSE 250


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 1   EVFGEIST*NYF*TVA*FEECLIFHPTLLNPDINPWVISYWSVFREC 141
           EV G +S       V  FEE  + + T+ N   NPW + +W    +C
Sbjct: 391 EVEGTLSVQPQANPVKGFEEYFL-NLTVENNRRNPWFVEFWEHHFQC 436


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 3/22 (13%)
 Frame = +1

Query: 85  LNPDIN---PWVISYWSVFREC 141
           L PD N   PW   YW    +C
Sbjct: 270 LTPDTNRRNPWFSEYWEEVFDC 291


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 305 LFGHMLNL*NKFNSFN 258
           LFGH + L NKF S +
Sbjct: 606 LFGHNVTLANKFESLS 621


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 3/22 (13%)
 Frame = +1

Query: 85  LNPDIN---PWVISYWSVFREC 141
           L PD N   PW   YW    +C
Sbjct: 360 LTPDTNRRNPWFSEYWEEVFDC 381


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 416 LSDTSAEFCFQRRVQRHIFRGSR*EQAVLASFCWKFSFRR 535
           +SD +   C  R  Q +  RG+   Q ++     +FSF +
Sbjct: 553 MSDQATYTCVARNAQGYSARGTLEVQVMVPPTIQQFSFTK 592


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,578
Number of Sequences: 438
Number of extensions: 3421
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)