Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29h20
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    28   1.0  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    27   1.8  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   7.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   7.1  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   9.4  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   9.4  

>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 24  NAFATSCLFSSEYSNWYIFEHNHTNSEFAYHGSRQEISNPVQNWKQMWKGYQKAD 188
           +AFAT+   + +   W   +    NS+  + G ++ I  PV +WK  WK  + A+
Sbjct: 390 DAFATADTITKD---WKSKKEFLKNSKLGWDGLKKNIKTPVIHWKD-WKVIRNAE 440


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 3   ISRRFYHNAFATSCLFSSEYSNWYIFEHNHTNS 101
           +S    HN ++  CL   E   W++F  +  N+
Sbjct: 531 VSHELIHNLYSLMCLVPVEPLRWWVFRFHSLNA 563


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 306 QLNWFSFSKLIRKPRPWGHF 247
           Q +W++  + IRK  P+GH+
Sbjct: 554 QEDWYAKKERIRKSSPYGHY 573


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 196  KLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPI 300
            K+ QLE TI  + K+L+            T+T+P+
Sbjct: 1691 KITQLEETIENLNKQLSNPEKTDESTSSVTETKPV 1725


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 166 GKVIKRLMVPKLAQLENTIMGIMKELTKMPPGSRLPD-KFTKTEPIKLLLD 315
           G V   L+  ++ + E TIM    E TK+P   + PD  F K   I  ++D
Sbjct: 254 GHVQISLLASRIERAEPTIMAFDIETTKLP--LKFPDSSFDKIMMISYMID 302


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 16  STTMLLQRVAYLAQNTATGTFSNIITQIQNLPTMDLGRRFR 138
           STT     VA + Q+TA   F+ + T     PT D   +FR
Sbjct: 167 STTAWTTFVASITQSTANFIFAEVSTFNNPWPTNDSDVKFR 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,816
Number of Sequences: 5004
Number of extensions: 38210
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)