Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29h20
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0132 - 20431122-20431477,20431739-20433758 30 1.3
04_04_0442 - 25229186-25229568,25229740-25232671 29 1.8
04_04_0850 - 28697462-28697684,28697894-28697971,28698103-286984... 28 4.1
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964... 28 4.1
01_06_0460 + 29545030-29546377,29546463-29547085 28 4.1
05_07_0246 + 28634530-28634735,28634841-28634901,28634996-286350... 28 5.4
05_06_0138 + 25946545-25946632,25946715-25947489,25947627-259479... 28 5.4
02_05_0172 + 26460884-26461084,26461168-26461391,26461726-264617... 28 5.4
10_08_0332 - 16843295-16843356,16843884-16846656 27 7.2
06_03_0602 - 22666227-22668740 27 7.2
02_05_0288 - 27549718-27549940,27550025-27550102,27550282-275506... 27 7.2
>11_06_0132 - 20431122-20431477,20431739-20433758
Length = 791
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 28 LLQRVAYLAQNTATGTFSNIITQIQNLPTMDL 123
LLQ + YL N TG+ ++++Q++ L T+DL
Sbjct: 324 LLQNI-YLQNNMLTGSLPSLLSQLKGLQTLDL 354
>04_04_0442 - 25229186-25229568,25229740-25232671
Length = 1104
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 49 LAQNTATGTFSNIITQIQNLPTMDLGR-RFRTP 144
LA N+ TG+F + + NL T++LGR +F P
Sbjct: 466 LADNSLTGSFPTDLCNLVNLTTIELGRNKFNGP 498
>04_04_0850 -
28697462-28697684,28697894-28697971,28698103-28698495,
28698590-28698893,28698978-28699188,28699943-28700674
Length = 646
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 132 ISNPVQNWKQMWKGYQK 182
+S P NWK+ WKG+Q+
Sbjct: 334 LSGPPINWKKHWKGWQR 350
>01_07_0383 - 43195095-43195322,43195408-43195638,43196134-43196454,
43196512-43196589,43196664-43197727,43197813-43198503,
43198743-43199541,43200010-43200158,43200159-43200286,
43200389-43200494,43200835-43200843,43201332-43201821,
43201896-43202554,43203759-43203851,43204044-43204196,
43205092-43205194,43205376-43205467,43206229-43206306,
43206987-43207049,43207339-43207512
Length = 1902
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 7 VDVSTTMLLQRVAYLAQNTATG--TFSNIITQIQNLPTMDLGRRFRTPCKTGNKCGKVIK 180
+++ T+ LLQ LA + +S +++ +Q LP + R P +TG CGK
Sbjct: 1600 IEMPTSELLQ-TDLLAHDRVDAFIAWSLLLSHLQLLPPASITRERHIPLRTGAPCGKKKD 1658
Query: 181 RLMVPK 198
++P+
Sbjct: 1659 AELMPE 1664
>01_06_0460 + 29545030-29546377,29546463-29547085
Length = 656
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +1
Query: 7 VDVSTTMLLQRVAYLAQNTATGTFSNIITQIQNLPTMDLGRRFRTPCKTGNKCGKVIKRL 186
VD ST ++ YL+ N +G F + ++++L +DL R C + G + L
Sbjct: 122 VDFSTLAPHLKLLYLSGNGFSGRFPESVLRLRHLRRLDLSGN-RLTCTIPPEIGHRLPSL 180
Query: 187 MVPKLAQLENTIMG 228
+ LA+ N+++G
Sbjct: 181 LTLHLAR--NSLVG 192
>05_07_0246 +
28634530-28634735,28634841-28634901,28634996-28635088,
28635326-28635391,28635506-28635576,28636225-28636329,
28637065-28637134
Length = 223
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 299 IGSVLVNLSGSRDPGGILVNSFMIPIIVFSNWAN 198
+G V ++LSG+ DP +++FM+ I V SN N
Sbjct: 153 VGWVHISLSGA-DPRETFIHTFMLQISVLSNHLN 185
>05_06_0138 +
25946545-25946632,25946715-25947489,25947627-25947910,
25948100-25948238,25948323-25948394,25948477-25948548,
25948726-25948806,25948894-25949054,25949162-25949424,
25949661-25949787,25949974-25950042,25950154-25950346,
25950446-25950860
Length = 912
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 49 LAQNTATGTFSNIITQIQNLPTMDL 123
L+ N TG+ N+I+Q+Q L +DL
Sbjct: 455 LSHNNLTGSIPNVISQLQFLAVLDL 479
>02_05_0172 +
26460884-26461084,26461168-26461391,26461726-26461756,
26462247-26462834
Length = 347
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 27 AFATSCLFSSEYSNWYIFEHNHTNSEFAYHGSRQEISNPVQNWKQMWK 170
A+ T E +N+ + H N F HG+ ++ S+P ++W QM K
Sbjct: 256 AYITDHAVIKEIANYLM--HTSKNLCFVLHGTPRQWSDPNRSWIQMEK 301
>10_08_0332 - 16843295-16843356,16843884-16846656
Length = 944
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 46 YLAQNTATGTFSNIITQIQNLPTMDLG 126
+LA N+ +G F NI+ + L T+D+G
Sbjct: 706 HLANNSFSGVFPNIVRKCGALVTLDMG 732
>06_03_0602 - 22666227-22668740
Length = 837
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 40 VAYLAQNTATGTFSNIITQIQNLPTMDL 123
+ YL+QN GT + +++I NL +DL
Sbjct: 330 ILYLSQNNFQGTIPSSLSRIPNLQELDL 357
>02_05_0288 -
27549718-27549940,27550025-27550102,27550282-27550674,
27550752-27551347,27552232-27552978
Length = 678
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 132 ISNPVQNWKQMWKGYQK 182
+S P NWK+ WKG+++
Sbjct: 371 LSGPPINWKKYWKGWER 387
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,206,311
Number of Sequences: 37544
Number of extensions: 231082
Number of successful extensions: 650
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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