Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29h20
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    31   0.52 
AF039036-5|AAB94164.2|  351|Caenorhabditis elegans Hypothetical ...    31   0.52 
AL023858-1|CAA19568.2|  328|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z77136-2|CAB00884.3|  670|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z48809-6|CAE17928.1|  174|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical...    27   6.4  
AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical...    27   6.4  
AF022978-4|AAG24178.1|  383|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AC024206-4|AAK67240.1|  564|Caenorhabditis elegans Hypothetical ...    27   8.5  
AC024206-3|AAF36052.1|  561|Caenorhabditis elegans Hypothetical ...    27   8.5  

>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -3

Query: 468 TPQSSATISDQILPQRVVLLKEQLLQNALTTFIFFQAGLQLVHT 337
           TP+ + TI D IL +     K Q ++  +T +IF+Q  L +VHT
Sbjct: 364 TPEENNTIWDYILTKARGPGKTQRIKEKMTGWIFWQEFLDVVHT 407


>AF039036-5|AAB94164.2|  351|Caenorhabditis elegans Hypothetical
           protein E03D2.4 protein.
          Length = 351

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 18  YHNAFATSCLFSSEYSNWYIFEHNHTNSEFAYHGSRQEISNPV 146
           Y  AF    LF+SEYS+W+ F+       + YH     I+N V
Sbjct: 166 YSWAFTKPLLFTSEYSSWF-FDPKIGKEAYFYHSIDHTINNLV 207


>AL023858-1|CAA19568.2|  328|Caenorhabditis elegans Hypothetical
           protein ZK285.1 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/65 (21%), Positives = 33/65 (50%)
 Frame = -1

Query: 251 ILVNSFMIPIIVFSNWANLGTISLLITFPHLFPVLHGVRNLLPRSMVGKF*ICVIMFENV 72
           ++ NS ++ +I+  +   LGT   L+ +  L+ +++   N+      G F     MF+++
Sbjct: 16  VITNSLLMFLILGKSPPQLGTYKWLMLYTSLYELVYTSMNIFVEPSTGTFQSSCYMFQDM 75

Query: 71  PVAVF 57
             ++F
Sbjct: 76  KKSMF 80


>Z77136-2|CAB00884.3|  670|Caenorhabditis elegans Hypothetical
           protein ZC376.2 protein.
          Length = 670

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 42  CLFSSEYSNWYIFEHNHTNSEFAYHGSR 125
           CL+++ ++N Y  EH + +     HG R
Sbjct: 104 CLYANVFTNQYCLEHKNCSVMLTIHGGR 131


>Z48809-6|CAE17928.1|  174|Caenorhabditis elegans Hypothetical
           protein T01E8.9 protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 205 QLENTI-MGIMKELTKMPPGSRLPDKFTKTEPIKLLLDQNYKEDVCMD 345
           +L+ T+  G ++ L + P GSRL   F+ ++P+  L D       C D
Sbjct: 63  KLKGTVSQGPLRLLVRYPNGSRLILSFSPSQPMTSLFDAIILNPACPD 110


>AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +1

Query: 1   ESVDVSTTMLLQRVAYLAQNTATGTFSNIITQIQNLPTMDLGRRFRTPCKTG-NKCGKVI 177
           + VDV   +L+QRV+ +++  ++ T   + +QI + P +         C T  +   +++
Sbjct: 108 KGVDVDVELLIQRVSEISEIQSSSTMHILFSQIWHDPGLSFEHEEGAHCLTNLSLSHRMV 167

Query: 178 KRLMVPKLAQLENTIMGIMKELT 246
             + +P +  + +    I K  T
Sbjct: 168 DNIWLPNVCIVNSKGSAIHKSPT 190


>AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +1

Query: 1   ESVDVSTTMLLQRVAYLAQNTATGTFSNIITQIQNLPTMDLGRRFRTPCKTG-NKCGKVI 177
           + VDV   +L+QRV+ +++  ++ T   + +QI + P +         C T  +   +++
Sbjct: 108 KGVDVDVELLIQRVSEISEIQSSSTMHILFSQIWHDPGLSFEHEEGAHCLTNLSLSHRMV 167

Query: 178 KRLMVPKLAQLENTIMGIMKELT 246
             + +P +  + +    I K  T
Sbjct: 168 DNIWLPNVCIVNSKGSAIHKSPT 190


>AF022978-4|AAG24178.1|  383|Caenorhabditis elegans Hypothetical
           protein T01G6.5 protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 127 RRFRTPCKTGNKCGKVIKRLMVPKLAQLENTIMGIMKELTKMPPGSRLP 273
           ++ R  CK+GNKC          K  ++   +   MK  +K PP + +P
Sbjct: 36  KKKRKSCKSGNKCRDFNGNFPQCKSCRMRKCLRVGMKLESKSPPPAAIP 84


>Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical
           protein R04F11.3 protein.
          Length = 385

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 169 KVIKRLMVPKLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPIKLLLDQNYKED 333
           K  KRL+VP     E   M + ++ T+    S LP+   +T  I+ +++    ED
Sbjct: 278 KAKKRLIVPDSDDEEQVPMEVEEKKTETKTNSSLPEDRRRTTRIEKVVETYVDED 332


>Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical
           protein F44F4.4 protein.
          Length = 890

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +3

Query: 36  TSCLFSSEYSNWYIFEHNHTN-----SEFAYHGSRQEISNPVQNWKQMWKGYQKADGT*I 200
           T+ L  S  +N  + E          S+F     +  +S   +N+ Q  +G+ +A+    
Sbjct: 86  TAILIRSSITNGSLLEEQRLKEVVKVSDFISTNFKLNVSGVEKNFNQFCRGFCQANE--- 142

Query: 201 GPIRKYYNG 227
            P+R+YYNG
Sbjct: 143 -PVRQYYNG 150


>AC024206-4|AAK67240.1|  564|Caenorhabditis elegans Hypothetical
           protein Y74C9A.4b protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 166 GKVIKRLMVPKLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPI 300
           GK IKRL + K  + ++ IM +   L + P G  + ++  + +PI
Sbjct: 346 GKAIKRLGIGKEKEEDDDIMVVDDCLLRKPSGPYIVEQSIEADPI 390


>AC024206-3|AAF36052.1|  561|Caenorhabditis elegans Hypothetical
           protein Y74C9A.4a protein.
          Length = 561

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 166 GKVIKRLMVPKLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPI 300
           GK IKRL + K  + ++ IM +   L + P G  + ++  + +PI
Sbjct: 343 GKAIKRLGIGKEKEEDDDIMVVDDCLLRKPSGPYIVEQSIEADPI 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,775,377
Number of Sequences: 27780
Number of extensions: 211262
Number of successful extensions: 628
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)