Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29h16
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    26   4.7  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   6.2  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.2  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    25   8.2  

>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 341 NKTQLTAKRNIFYD*LSRLLSKVAIC 264
           NKT+L A  N F++     LSK+++C
Sbjct: 73  NKTKLAALLNRFHEETDNFLSKLSLC 98


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 447 NNFQPNQTEITGIFNDPVLSE 509
           NNF P+Q ++ GI N  ++ E
Sbjct: 167 NNFTPSQLQLLGITNSTIVGE 187


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 338 CYSISFAFCYITFYVASHGNVIK--SILCPSPGSKLPPQQFSA 460
           C   S   C I F+  S  + +   S+ C SP   LPP   S+
Sbjct: 19  CIPCSLGTCLIHFHEFSSSSFMDPVSLFCSSPYPNLPPHSRSS 61


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 9   YDNSVDYYQSRQCDFWTIIGKSEKRI 86
           YD + D++  ++ D W    KS+K++
Sbjct: 209 YDLATDFFHKQKIDEWVSTKKSDKKL 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,578
Number of Sequences: 5004
Number of extensions: 49325
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)