Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29h16
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0583 + 24078766-24079800,24080585-24081643                       31   0.70 
04_04_1137 - 31153104-31153239,31153804-31154660,31155053-311552...    29   4.9  
10_08_0571 - 18855317-18855541,18855667-18855747,18855849-188559...    28   8.6  
02_02_0081 - 6608901-6609680,6610380-6610808,6610893-6610994,661...    28   8.6  

>02_04_0583 + 24078766-24079800,24080585-24081643
          Length = 697

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 492 DPVLSEFVSRFLGNLVPELLEVFETEINEIVTDIFFEIAQ 611
           DP+L EF++RF+  L P L   F T    ++ ++   +A+
Sbjct: 75  DPLLDEFLARFVAALRPTLAAAFPTHARHVLDEMLRLVAE 114


>04_04_1137 -
           31153104-31153239,31153804-31154660,31155053-31155202,
           31156188-31156292,31156405-31156473
          Length = 438

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 370 HVLCRVPRERDKKYPMSFSWF*ATSSTIFSQIRLK*PVSSMIP 498
           HV   +PR  DK Y     WF   +ST FSQ  ++ P +S +P
Sbjct: 373 HVGMPMPRPSDKFY--GSGWFPPQNSTEFSQETVQFPHNSSVP 413


>10_08_0571 -
           18855317-18855541,18855667-18855747,18855849-18855963,
           18856061-18856224,18856307-18856540,18856626-18856781,
           18857113-18857244,18857850-18857984,18858071-18858457,
           18858708-18858826,18858914-18859124,18859268-18859339,
           18859542-18859628,18859993-18860127,18860240-18860368
          Length = 793

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 263 AFGQKILLICQYRLI*ISIVSFKEYGSKPALNKG 162
           +  Q +LLICQ ++  I+IV  K      AL KG
Sbjct: 422 SLSQLVLLICQIKVNSIAIVHMKSMDGVKALTKG 455


>02_02_0081 -
           6608901-6609680,6610380-6610808,6610893-6610994,
           6611114-6611429,6611624-6611806,6611909-6612030,
           6612181-6612251,6612732-6612921
          Length = 730

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 365 YITFYVASHGNVI--KSILCPSPGSKLPPQQFSAKS 466
           Y T +V   G  I  K+   P+P + LPP+Q+S  S
Sbjct: 146 YCTVHVIHKGKAIQVKAAKAPAPFTTLPPKQYSQSS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,175,254
Number of Sequences: 37544
Number of extensions: 269343
Number of successful extensions: 586
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)