Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29h15
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom... 27 2.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.6
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 2.6
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 26 4.5
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 26 5.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 5.9
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 5.9
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 26 5.9
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy... 26 5.9
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 26 5.9
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 26 5.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.9
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 7.9
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 25 7.9
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 7.9
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 7.9
>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 2.6
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Frame = +3
Query: 315 LQRIKSEIDSEEGTTEMHQLEELFQKNLREMLQLKKITNATTGQLDERR--TQSESRLMA 488
+ + K I G+ ++++ +QL K+ NA + RR T+S +
Sbjct: 100 ISKKKKNIKDTAGSNWFDMPATELTESVKRDIQLLKMRNALDPKRHYRRENTKSMPKYFQ 159
Query: 489 TENKLEAAMLRFNL-VQTENKK--IRDEISHMLKDRAIFNKNWAKMMNSLSKGKK 644
+ +E ++ + T +K I DE+ H + R+ F K + ++ S G+K
Sbjct: 160 VGSIVEGPQDFYSSRIPTRERKETIVDELLHDSERRSYFKKKYLELQKSKMSGRK 214
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +2
Query: 149 TTSDYRSPPTAAKTGHATRNLEERVHKLAERLENRKIRSTQEER*ENEEHSKKSSIAEDQ 328
T D +SPP+++K+G + +L R K E R + ++E H + S +D+
Sbjct: 567 TEGDAKSPPSSSKSGQGS-SLSRRASK-HESKHKRDSKHEARPESKHESHRESKSAEKDK 624
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 131 SNRSR*TTSDY-RSPPTAAKTGHATRNLEERVHKLAERLENRKIRSTQEER*ENEEHSKK 307
S+RSR DY RSPP +++ + R EER + R ++ R ++ H +K
Sbjct: 164 SSRSRHRYDDYSRSPPYSSRHSRSRRRYEER----SSRSSRAHDYDYEDLRDDDRSHERK 219
Query: 308 SS 313
S
Sbjct: 220 RS 221
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +3
Query: 24 SLYYSNMESGGQDEKNDTEILNKLEDERFRLQRQVRVIEADRLHRTTGVHPQLR 185
SL + + GGQ N I NK+ + L + D LHR V+P R
Sbjct: 196 SLLSNKLPFGGQ---NTDVIYNKIRHGAYDLPSSISSAAQDLLHRMLDVNPSTR 246
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 176 TAAKTGHATRNLEERVHKLAERLENRKIRSTQ 271
T+AK GH + L ++ ++ +EN + +STQ
Sbjct: 153 TSAKAGHNVKLLFRKIAQMLPGMENVETQSTQ 184
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.8 bits (54), Expect = 5.9
Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 5/160 (3%)
Frame = +3
Query: 72 DTEILNKLEDERFRLQRQVRVIEADRLHRTTGVHPQLRRQDMLLGTLKKEYINLLKDLKI 251
DTEI N+ E ER ++ +Q + R+ + + LR+Q+ +L K + +
Sbjct: 1492 DTEIPNEEEMERKKVMQQEVLRLRSRIAKELQKNELLRKQNQVLQDQVKALQETVVSSEE 1551
Query: 252 ARSGA-HXXXXXXXXXXXXRALLQRIKSEIDSE---EGTTEMHQLEELFQKNLREMLQ-L 416
A S + H +L I +E + +T QK + + L
Sbjct: 1552 AESASVHADTKDLENLKKTEEMLSVTFQVIFNESISDFSTSTADFTTFVQKEWEKRREIL 1611
Query: 417 KKITNATTGQLDERRTQSESRLMATENKLEAAMLRFNLVQ 536
+K Q +++ + + + NKL+ +ML NL +
Sbjct: 1612 QKDVEEQVAQSHQKQLDNIRKELEMRNKLKLSMLEKNLAR 1651
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/77 (24%), Positives = 38/77 (49%)
Frame = +3
Query: 345 EEGTTEMHQLEELFQKNLREMLQLKKITNATTGQLDERRTQSESRLMATENKLEAAMLRF 524
EE T E+ +E+ K+ +E +++ G+L RT++E + E +
Sbjct: 542 EEITQELQDTKEVLSKSSKESDDYEEVV----GKL---RTEAEREIEKFEKTIRENEESI 594
Query: 525 NLVQTENKKIRDEISHM 575
+L + E +K+ DEI+ +
Sbjct: 595 SLFKEEVEKLTDEITQL 611
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +3
Query: 357 TEMHQLEELFQKNLREMLQLKKITNATTGQLDERRTQSESRLMATENKLEAAMLRFNLVQ 536
TE + E F+K +RE + + +L + TQ R ++ + R ++
Sbjct: 574 TEAEREIEKFEKTIRENEESISLFKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLE 633
Query: 537 TENKKIRDE 563
EN K +++
Sbjct: 634 EENNKAKED 642
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 167 SPPTAAKTGHATRNLEERVHKLAERLENRKI 259
+P + G AT N+ ++ H+L RL+N+ I
Sbjct: 1278 TPAFTLRPGAATYNVRKQDHRLYTRLDNKLI 1308
>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = -3
Query: 592 IALSFNIWLISSLIFLFSVWTKLNLSMAASSLFSVAIS 479
+++ F++ ++ SLI L VW KL + S+++SV+ S
Sbjct: 189 LSICFSVSVVVSLIGLLGVWQKL---LPKSNVYSVSSS 223
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 125 GASNRSR*TTSDYRSPPTAAKTGHATRNLEERVHKLAERLEN--RKIRSTQEER*ENEE 295
G RSR S Y A +L + + +R ++ R++R QEE+ +NE+
Sbjct: 85 GGLKRSRTLESSYEDETETANKLSRVSSLVSVIRQTIDRKKSLERRVREEQEEKTDNED 143
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 152 TSDYRSPPTAAKTGHATRNLEERVHKLAERLENRKIRSTQEER*ENEEHSKKSSIA 319
T +Y S K+ NLE++ H L E L+N + + E SK +IA
Sbjct: 2 TENYGSMEHRKKSFRNNENLEQQFHPLREELDNAGPINDRTSELSLEGVSKAEAIA 57
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/82 (18%), Positives = 43/82 (52%)
Frame = +3
Query: 372 LEELFQKNLREMLQLKKITNATTGQLDERRTQSESRLMATENKLEAAMLRFNLVQTENKK 551
LE+L + ++ L++ +N+ L E R+ +RL + L + ++++++ +
Sbjct: 1146 LEQLTNEKNELIVSLEQ-SNSNNEALVEERSDLANRLSDMKKSLSDSDNVISVIRSDLVR 1204
Query: 552 IRDEISHMLKDRAIFNKNWAKM 617
+ DE+ + KD+ + ++++
Sbjct: 1205 VNDELDTLKKDKDSLSTQYSEV 1226
>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 528 LVQTENKKIRDEISHMLKDRAIF 596
LV E K+ DE+ MLK+ ++F
Sbjct: 43 LVSREISKLEDEVCEMLKESSLF 65
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -3
Query: 667 DSKRSVRNFFPLLREFIIFAQFLLNIALSFNIWLISSLIFLFSVWTKLNLSMAASSLF 494
D ++ V N PL + + ++ L F W++ +++ VW L M +SS F
Sbjct: 389 DWQQVVYNSNPLASPWWVICNTFGSVVLIF--WIVVPILYYKGVWFSNYLPMLSSSTF 444
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 453 ERRTQSESRLMATENKLEAAMLRFN 527
+RRTQSE + A N +E A + F+
Sbjct: 205 DRRTQSELKQKANANNVEKANMEFD 229
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 84 LNKLEDERFRLQ-RQVRVIEADRLHRTTGVHPQLRRQDML 200
L KLE ER RLQ +Q R E D+ R +LR++ +L
Sbjct: 127 LEKLEKERIRLQEQQRRKEERDQKLREKEEAQRLRQEQIL 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,706
Number of Sequences: 5004
Number of extensions: 50623
Number of successful extensions: 229
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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