Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29h10
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   3.8  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   5.0  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 144 EQLTLARDIKRAIELLEKLQQSGEVPATKLAALQKVLQSDFLNAV 278
           EQL    D+K+AI L +   QS E+  T L A  ++      N +
Sbjct: 363 EQLEPDSDLKKAIILFKCRYQSSEIDQTTLRAFGEICTGKLENTL 407


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = +3

Query: 144 EQLTLARDIKRAIELLEKLQQSGE--VP--ATKLAAL-QKVLQSDFLNAVRE 284
           EQ    RD+K  ++LLE+LQ   +  VP   T L AL QK LQ D   ++ +
Sbjct: 575 EQEEQERDMKIQLDLLEELQSRVQKLVPERQTTLQALQQKCLQDDISESLMQ 626


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,157
Number of Sequences: 5004
Number of extensions: 38067
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)