Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29h07
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    31   0.16 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.49 
SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.4  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   7.9  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   7.9  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   7.9  

>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
 Frame = +1

Query: 61  CVFYLKIQLVIKFTNVVLIYLNKLIIMQQFTLIFVVHLTALFASTACIDYDGFL---NMK 231
           C+   K++    ++ V+L    KL  ++ FT  FV+ L A + +TAC    G+L     +
Sbjct: 113 CILNYKLEWT--YSGVLLHRPWKLFSLKPFTAAFVLLLAASYLATACFRMLGYLGTPRSR 170

Query: 232 LEHSLNCNDEKFCHRG-SITLKSIRTGVPIIDQI 330
              +   N++KF     S   + +  G+ +   +
Sbjct: 171 FHDNRRWNEQKFMELAVSAVEEQLSNGIQLFSNV 204


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 475 NGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYK 591
           NG+  V+N W+L NG  I +   +A++   +K+ T   K
Sbjct: 653 NGIQRVVNYWLLHNGFSIGIGDTIADA-DTMKEVTRTVK 690


>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 538 FQVANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDRE 681
           FQ+ +  Q  +   +E  LN+  Y  Y E+ P P   S  ++ E + E
Sbjct: 89  FQLVDERQIEEPGEDEMALNAGGYYPYAEEVPPPSYPSLEEENEGNEE 136


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 289  LKSIRTGVPIIDQILFNEKHL 351
            L  +R  +PI+D+  F EKHL
Sbjct: 1380 LNFLRNFIPILDEQKFREKHL 1400


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 472 ENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYKL 594
           EN   + +   ++PNG  IAVN Q  N    LK A  E+KL
Sbjct: 477 ENRFGESVTVDLIPNGRNIAVNNQ--NKMNYLK-ALTEHKL 514


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 137 IINLFKYINT-TLVNLITSWIFK*KTH 60
           I+ ++ +  T +L NL++SWI   KTH
Sbjct: 299 IMYVYSWTGTVSLCNLVSSWILNTKTH 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,424
Number of Sequences: 5004
Number of extensions: 43846
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)