Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29h07
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0008 + 8901817-8902146,8903058-8903120,8903226-8903321,890...    44   9e-05
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324...    31   0.67 
07_03_0708 - 20865786-20867153                                         29   2.7  
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581...    29   3.6  
02_04_0610 + 24335153-24337724,24337835-24338256                       28   6.2  
07_03_0945 - 22791754-22791863,22792295-22792367,22792457-227925...    28   8.3  

>11_03_0008 +
           8901817-8902146,8903058-8903120,8903226-8903321,
           8903924-8903971,8904558-8904629,8905373-8905431,
           8905582-8905672,8905749-8905886
          Length = 298

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
 Frame = +1

Query: 190 STACIDYDGFLNMKLEHSLNCNDEKFCHRGSIT--LKSIRTGVPIIDQILFNEKHL---- 351
           S+A       +   LEH L      F   GS +  LKS   G   + ++ F    L    
Sbjct: 70  SSAAAAESSAVQFSLEHDLGAG---FVPAGSFSARLKSSAHGSQTLTKLRFTRNELTGDE 126

Query: 352 -EALKKLANEDEFYSIKTTITTGENSKGTEYLSSVKAQAFLENGLSDVINAWILPNGAVI 528
            +A KKL +ED FYSI+      + ++    +SS+KA+      L + I    +    ++
Sbjct: 127 KDAFKKLLDEDGFYSIRLLSNVLDPARKDYVVSSIKARCIPRESLDEHI-VIHMDGVNIL 185

Query: 529 AVNF-QVANSTQPLK-QATNEYKLNSKFYLRYIEQAPVPDTASYIQKM 666
           AVN+  V   T P   +  +++  NS   L+  EQA  P T S++ ++
Sbjct: 186 AVNYGSVGGCTYPRPVKMPSKWVFNSYTVLKTSEQA--PRTPSFVDQL 231


>09_03_0179 -
           13131404-13131514,13131834-13131920,13132316-13132448,
           13133079-13133319,13133423-13133540,13133546-13133731,
           13133864-13134049,13134443-13134652,13135171-13135347,
           13135823-13135964,13136385-13136927,13137565-13138022
          Length = 863

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 94  KFTNVVLIYLNKLIIMQQFTLIF--VVHLTALFASTACIDYDGFLNMKLEHSL 246
           KFT VV+++  K +IM  + ++   V HL  +  S++ + Y+    ++  H L
Sbjct: 627 KFTAVVIVFKKKSVIMILYNMLSQNVFHLVEMVVSSSWLGYEALSQVEYTHML 679


>07_03_0708 - 20865786-20867153
          Length = 455

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 343 KHLEALKKLANEDEFYSIKTTITTGENSKGTEYLSSVKAQAFLENG 480
           KH EA+++  +   F S   T   G+ +      SSV  QA LENG
Sbjct: 42  KHSEAVRRDGHRLAFLSYAATAAAGKATTTGTNSSSVNVQAQLENG 87


>06_03_0650 + 23157130-23157582,23157687-23157898,23157982-23158128,
            23158214-23158347,23158442-23158551,23158711-23158817,
            23159045-23159183,23159286-23159402,23159737-23159844,
            23159927-23159998,23160108-23160230,23160336-23160495,
            23160585-23160706,23160825-23160962,23161042-23161184,
            23161305-23161367,23161567-23161630,23161709-23161844,
            23162123-23162196,23162764-23162858,23162951-23162982,
            23163104-23163276
          Length = 973

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/112 (20%), Positives = 43/112 (38%)
 Frame = +1

Query: 274  RGSITLKSIRTGVPIIDQILFNEKHLEALKKLANEDEFYSIKTTITTGENSKGTEYLSSV 453
            R ++ L +I   +P++  I       +       ED   SI   + + +  + T+Y   V
Sbjct: 672  RNTVLLDAISWRIPLVSDIPTIIFGADVTHPETGEDSSPSIAAVVASQDWPEVTKYAGLV 731

Query: 454  KAQAFLENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYKLNSKFY 609
             AQA  +  + D+   W  P    +     +       ++AT +  L   FY
Sbjct: 732  CAQAHRQELIQDLYKTWHDPQRGTV-TGGMIRELLISFRKATGQKPLRIIFY 782


>02_04_0610 + 24335153-24337724,24337835-24338256
          Length = 997

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = +1

Query: 73  LKIQLVIKFTNVVLIYLNKLIIMQQFTLIFVVHLTALFASTAC--IDYDG--FLNMKLEH 240
           +KIQ+ IK  ++ + + +K  + +   L  + H   L   TAC  IDY G  F  +  E+
Sbjct: 692 VKIQVAIKVFDLEMRWADKSFVSECEILRSIRHRNLLPILTACSTIDYSGNDFKALIYEY 751

Query: 241 SLNCNDEKFCHRGSITLKS 297
             N N + + H+ +  + S
Sbjct: 752 MPNGNLDMWLHKKNTAVAS 770


>07_03_0945 -
           22791754-22791863,22792295-22792367,22792457-22792552,
           22793268-22793331,22793957-22794008,22794525-22794622,
           22795108-22795166,22795981-22796013
          Length = 194

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 67  FYLKIQLVI-KFTNVVLIYLNKLIIMQQFTLIFVVHLTALFASTA 198
           F+LK Q  I +  N++   LNK +   +  + F+ H+ A  ASTA
Sbjct: 115 FFLKHQAKIDRILNILSKELNKFVSSHEDEIHFIEHMAARGASTA 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,778,242
Number of Sequences: 37544
Number of extensions: 224258
Number of successful extensions: 629
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)