Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29h05
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.2  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   9.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 565 DLHYFQHPNKFF*RVPYS*ESYIW 494
           D  YF  PN+    VP S  +Y W
Sbjct: 241 DPDYFDIPNELVLEVPLSHPTYDW 264


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 224 CVYRTSLKLIYTKSRLCSCQTRKRLTVKTSRLSEN 328
           C Y  +    Y K+    C T KRLT K +   EN
Sbjct: 436 CRYPNASVTPYNKNYTKFCSTEKRLT-KQNTAFEN 469


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 559 HYFQHPNKFF 530
           HY Q+P KFF
Sbjct: 132 HYKQNPEKFF 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,965
Number of Sequences: 438
Number of extensions: 2427
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)