Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29h03
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-8|AAM22060.1|  517|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF016685-11|AAO12416.1|  172|Caenorhabditis elegans Hypothetical...    28   6.6  
AF016685-10|AAG24143.2|  195|Caenorhabditis elegans Hypothetical...    28   6.6  

>U28991-8|AAM22060.1|  517|Caenorhabditis elegans Hypothetical
           protein F08F8.9c protein.
          Length = 517

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 377 LVTVSLEQESVPASLVTT-PQRTSYNTD--LIEMTHNPEERKEK 499
           ++ V LE   +P++ +   P+ T  N+   ++  T  PEERKEK
Sbjct: 12  VIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEK 55


>U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical
           protein F08F8.9a protein.
          Length = 626

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 377 LVTVSLEQESVPASLVTT-PQRTSYNTD--LIEMTHNPEERKEK 499
           ++ V LE   +P++ +   P+ T  N+   ++  T  PEERKEK
Sbjct: 12  VIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEK 55


>U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical
           protein F08F8.9b protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 377 LVTVSLEQESVPASLVTT-PQRTSYNTD--LIEMTHNPEERKEK 499
           ++ V LE   +P++ +   P+ T  N+   ++  T  PEERKEK
Sbjct: 12  VIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEK 55


>AF016685-11|AAO12416.1|  172|Caenorhabditis elegans Hypothetical
           protein F59E11.7b protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -1

Query: 432 GVVTRDAGTDSCSNETVTSSVVAVGSDFADTLSRLFGELFDERECLEAL 286
           GVV      D     +     V    DFAD  ++LF +  +E+ CL  L
Sbjct: 90  GVVDSHVSADILHTFSSCQFYVFYNQDFADCANKLFDKRNEEKACLHTL 138


>AF016685-10|AAG24143.2|  195|Caenorhabditis elegans Hypothetical
           protein F59E11.7a protein.
          Length = 195

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -1

Query: 432 GVVTRDAGTDSCSNETVTSSVVAVGSDFADTLSRLFGELFDERECLEAL 286
           GVV      D     +     V    DFAD  ++LF +  +E+ CL  L
Sbjct: 90  GVVDSHVSADILHTFSSCQFYVFYNQDFADCANKLFDKRNEEKACLHTL 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,994,448
Number of Sequences: 27780
Number of extensions: 266319
Number of successful extensions: 761
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)