Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29h03
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    27   0.12 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.8  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 403 IRTCISCNNTPEDVIQHRLNRNDSQSRRTKREVN 504
           IR     NN   D IQ+  N+ND+  +  K+  N
Sbjct: 409 IRNTHCVNNNQNDNIQNTNNQNDNNQKNNKKNAN 442


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 476 CESFLLSLCCMTSSGVLLQEMQVRIPVLMKP*RAQ 372
           C + +L+LC ++    L     V  P +M P RA+
Sbjct: 149 CTASILNLCAISLDRYLAVTRPVSYPQIMSPRRAR 183


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 409 TCISCNNTPEDVIQHRLNRNDSQSRRTKREVNYFNVN 519
           +C++C+  P    Q   +R +S  RR +R   Y +V+
Sbjct: 388 SCVACSPPPR---QTPPSRKESGRRRRRRTPRYNSVS 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,900
Number of Sequences: 438
Number of extensions: 3160
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)