Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29h02
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    30   0.31 
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    28   0.95 
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    27   1.7  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   2.2  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    26   3.8  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   5.1  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   5.1  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    26   5.1  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   6.7  
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr...    25   6.7  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   6.7  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   8.8  

>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 238 MASPNPEIDLSSMFISKVNNSKSPTRSEPTSRRNSTVKSSLPAEIITVKDFF-DFMKTAY 414
           +A  N  +D SS F+SKVN   +  R+  +++ N ++  S P+EI  +  F     +   
Sbjct: 101 IALGNDNVD-SSAFLSKVNKGVNAMRNSTSNQTNDSILIS-PSEITNMDPFLKGSARWTA 158

Query: 415 QVYEYLE 435
           + ++YLE
Sbjct: 159 EHWDYLE 165


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +1

Query: 430 LEGDEDDGSKIDWEELTK-LTVLNHVIEQQERDLLLQTAFSEQKPITSKSETALERKNSE 606
           LE DE++ S  D EE+ K +T +    EQ   +   ++  SE+KP+ S  E   E  +SE
Sbjct: 737 LEMDEEE-SDFDSEEMDKAMTDMGSDSEQSADENDNESMASEEKPMFSDEENLSEIAHSE 795

Query: 607 FE 612
            E
Sbjct: 796 DE 797


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +1

Query: 283 SKVNNSKSPTRSEPTSRRNSTVKSSL---PAEIIT-VKDFFDFMKTAYQVYEYLEGD 441
           +KV N +S T+ EP  + N   +S+L   PA  ++ V+  +DF  T      + +GD
Sbjct: 185 NKVENPQS-TKDEPLQKTNQRQESNLATSPASTVSRVRALYDFAATEQGELSFKKGD 240


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
 Frame = +1

Query: 283 SKVNNSKSPTRSEPTSRRNSTVKSSLPAEIITVKDFFD--FMKTAYQVY-EYLEGDEDDG 453
           ++ NN KS TRS  +          + ++     + FD  F K  + V    ++G E   
Sbjct: 22  TRPNNKKSRTRSTESHEDRQAKVQKIQSDF----NLFDRQFTKRKFDVGGRRVKGTEGKP 77

Query: 454 --SKIDWEELTKLTVLNHVIEQQERDLLLQTAFSEQKPITSKSETALERKNSEFER 615
             S+   EEL + T+   + ++     ++   F E  P  S  E  LER + E +R
Sbjct: 78  GVSRGVGEELRRRTIGAELKKRNRSGAIIDRRFGENNPHLSVEEKMLERFSREQQR 133


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +1

Query: 400 MKTAYQVYEYLEGDEDDGSKIDWEELTKLTVLNHVIEQQER--DLLLQTAFSEQKPITSK 573
           +K+ Y V +YL     DGS   W++   L V+ H I +  R   ++   A S  +P   +
Sbjct: 242 VKSVYPVDDYLITASSDGSVCIWDKDWNL-VIEHNIPEGNRITCMVAMLADSNSEPKNVE 300

Query: 574 SETALERKNSEFERLE 621
            E A +R++ + E  E
Sbjct: 301 DEAA-KRQSLDSETSE 315


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 424 EYLEGDEDDGSKIDWEELTKLTVLNHVIEQQERDLLLQTAFSEQKPITS-KSETALERKN 600
           EY E +E+D   +D +EL  +T    + E +    +      EQ+ + + + + A +R+ 
Sbjct: 511 EYDEDEEEDEEDVDEDELDLMTDEQRMEEGRRMFQIFAARLFEQRVLQAYREKVAQQRQA 570

Query: 601 SEFERLE 621
              E +E
Sbjct: 571 KLLEEIE 577


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +1

Query: 460 IDWEELTKLTVLNHVIEQQERDLLLQTAFSEQKPITSKSET 582
           + W+++T L   +  +++ + D L+Q   S+ + + + SET
Sbjct: 647 VSWKQVTDLLYSHLSLKEGQDDSLIQQIISDPETVKTLSET 687


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 439 DEDDGSKIDWEELTKLTVLNHVIEQQERD 525
           D  +G K+DW+E   LTV     +Q+ ++
Sbjct: 242 DHAEGDKVDWKENADLTVRTVTKKQRNKN 270


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 424 EYLEGDEDDGSKIDWEEL 477
           E LEGDE+DGS  D ++L
Sbjct: 129 ENLEGDEEDGSFSDLKDL 146


>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 226 ILKTITTGIETTKNGLIKQ 170
           ILKT   GI+T  NGL+ Q
Sbjct: 74  ILKTTQEGIQTAMNGLLDQ 92


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +1

Query: 427  YLEGDEDDGSKIDWEELTKLTVLNHVIEQQERDLLLQ 537
            YL+GDE+D ++ + +E  K+  L    E++++ LL +
Sbjct: 956  YLDGDENDNAEAETKE--KMDELQARCEKEQQSLLAE 990


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 262 DLSSMFISKVNNSKSPTRSEPTSRRNSTVKSSLPAE 369
           ++SS F +    SK P+ S+ TSR     K+  P++
Sbjct: 147 NVSSTFRNATRKSKKPSASKDTSRGVRKSKAGAPSD 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,940
Number of Sequences: 5004
Number of extensions: 39766
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)