Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29h01
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    31   0.71 
AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z81069-8|CAB02996.2|  600|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL021448-4|CAA16278.2|  600|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z48809-6|CAE17928.1|  174|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF022978-4|AAG24178.1|  383|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -2

Query: 596 TPQSSATISDQILPQRVVLLKEQLLQNALTTFIFFQAGLQLVHT 465
           TP+ + TI D IL +     K Q ++  +T +IF+Q  L +VHT
Sbjct: 364 TPEENNTIWDYILTKARGPGKTQRIKEKMTGWIFWQEFLDVVHT 407


>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -1

Query: 258 SCLDPW*ANSEFV*LCSKMYQLLYSEPFYFFSTYYPCRCLV*YIHRNSYYC*LKLTYK 85
           +CL+P  A      L +K   L    PF+F   +  C+ L    HR  +YC LK T K
Sbjct: 82  TCLEPNWAVRLIDSLPTKPPGLSRKGPFFFIGDFETCKELWSVEHRQVHYCTLKGTVK 139


>Z81069-8|CAB02996.2|  600|Caenorhabditis elegans Hypothetical
           protein Y2H9A.4 protein.
          Length = 600

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 227 NLCDYVRKCTSCCILSHFTFFRLTTPAVVWFSIFIGI 117
           N+  Y+ K   CC++  F F  L    V+ F +F+ +
Sbjct: 119 NVTQYLSKIFRCCVIKPFVFSFLVVAGVLSFYLFLAM 155


>AL021448-4|CAA16278.2|  600|Caenorhabditis elegans Hypothetical
           protein Y2H9A.4 protein.
          Length = 600

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 227 NLCDYVRKCTSCCILSHFTFFRLTTPAVVWFSIFIGI 117
           N+  Y+ K   CC++  F F  L    V+ F +F+ +
Sbjct: 119 NVTQYLSKIFRCCVIKPFVFSFLVVAGVLSFYLFLAM 155


>AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical
           protein C16A11.3 protein.
          Length = 726

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 27/113 (23%), Positives = 48/113 (42%)
 Frame = +3

Query: 105 NSSKNSDEYTKPDNGRGSKSKKSKMAQNTATGTFSNIITQIQNLPTMDLGRRFRTPCKTG 284
           +SS++SD++  P     S   + +   N         +   Q    + +G R  T C T 
Sbjct: 4   DSSEDSDQFEPPRAPVSSIKIECQCGTNNTNNRLIKCVGCAQWQHAVCMGVR-PTDCVTA 62

Query: 285 NKCGKVIKRLMVPKLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPIKLLLD 443
            KC     RL++  +A+ E +  G+  +  +  P  ++  K TK   I+  LD
Sbjct: 63  YKCEDCEPRLLIVTIAEAE-SFQGV--KPPEPTPAPKIERKTTKVLYIQRFLD 112


>Z48809-6|CAE17928.1|  174|Caenorhabditis elegans Hypothetical
           protein T01E8.9 protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 333 QLENTI-MGIMKELTKMPPGSRLPDKFTKTEPIKLLLDQNYKEDVCMD 473
           +L+ T+  G ++ L + P GSRL   F+ ++P+  L D       C D
Sbjct: 63  KLKGTVSQGPLRLLVRYPNGSRLILSFSPSQPMTSLFDAIILNPACPD 110


>AF022978-4|AAG24178.1|  383|Caenorhabditis elegans Hypothetical
           protein T01G6.5 protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 255 RRFRTPCKTGNKCGKVIKRLMVPKLAQLENTIMGIMKELTKMPPGSRLP 401
           ++ R  CK+GNKC          K  ++   +   MK  +K PP + +P
Sbjct: 36  KKKRKSCKSGNKCRDFNGNFPQCKSCRMRKCLRVGMKLESKSPPPAAIP 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,585,981
Number of Sequences: 27780
Number of extensions: 273691
Number of successful extensions: 840
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)