Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29g22
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    29   0.58 
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    29   0.76 
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   2.3  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   4.1  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    26   5.4  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   5.4  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   5.4  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   7.1  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.1  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   9.4  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   9.4  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   9.4  

>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 600 CQCGHRLYKYACKYMAYQN 544
           C CG+ L+ Y CK++A+ N
Sbjct: 197 CDCGYCLHVYCCKHLAHVN 215


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -1

Query: 224 NGKFIFGLCHFIFFKRIFRVVN*IMSNLIDMRMMFFYRFSPWMLSNF 84
           NG F+  LC FIF + I R +     ++ +  +MFF   S  +LSNF
Sbjct: 84  NGVFLIALCMFIFMEAIERFIE--PPSVSNPTLMFFVG-SLGLLSNF 127


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 171 KYPFKENKMTKPKDKFTVIGNFVTKEFIYCIRLVQGLHKYRKH-IFDTPVIRGVTGVEWP 347
           KYP  E K  K    F ++      E ++   L+    K  +H ++ T V+R   G  WP
Sbjct: 193 KYPLLEGKDWKIGGSFGIMPPNSDAEVLHLAHLL----KIPQHELYVTKVLR-TNGGRWP 247

Query: 348 AVWNDIK 368
            +W + K
Sbjct: 248 TIWGEDK 254


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +3

Query: 288 YRKH--IFDTPVIRGVTGVEWPAVWNDIKIKFGGK-AYCLQSQVAVVLNGEFIGGELELK 458
           Y+KH  IFD+ +I+ +   +  A    I     G  A  +Q++ ++    EF+  ELE  
Sbjct: 217 YQKHVLIFDSKIIKFLPNSQIDAQLASIDKSIDGSVADLIQARASIAQRSEFLNEELEQL 276

Query: 459 SLI 467
           S +
Sbjct: 277 SQV 279


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 36  INKMSLFSTYLPQSKKEITQHPWAK 110
           +NK    S YLP+++K  T +P++K
Sbjct: 352 LNKWDRSSFYLPKTEKGYTDYPFSK 376


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 462 LIESTYKYHLKLDYCKESIKEFYKFVK 542
           L+ESTY++ L     +  ++EFY  +K
Sbjct: 557 LLESTYRWCLSGTPMQNGVEEFYSLIK 583


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 428 AVQNNCNL*LKTVCFSSKFNLYIIPNGRPFNTRNTSDHWG 309
           AVQ   N  +  +C +S+ N +  PNGR  +  N S  WG
Sbjct: 660 AVQEWMNYHIPGICTTSQSNGFTCPNGR--SIYNASLIWG 697


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 6   SELSIASKFIINKMSLFSTYLPQSKKEITQHPWAKSIKEH 125
           +E+S     +IN+M   +     S+ E  QHPW  ++  H
Sbjct: 400 NEISEEGIDLINRMLEINPEKRISESEALQHPWFYTVSTH 439


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 525 FYKFVKSSGRPCTYMHICIDDDHIGTLIFML 617
           +Y FV + GR  TY++  I D  + TL   L
Sbjct: 640 YYSFVHNRGRFATYVYFIIKDCVLRTLAHKL 670


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 39  NKMSLFSTYLPQSKKEITQHPWAKSIKEHHAHIYKIAHNSINNPKY-PFKENKMTKPKDK 215
           + ++L +T  P S+ E       K + E    ++    ++ ++  Y P  E+ +   K K
Sbjct: 450 DNLNLTTTDSPMSEAEPVSEEEYKDVMETAKALHHGDDDAASDTSYEPLPESVIEDAK-K 508

Query: 216 FTVIGNFVTKEFI 254
             VIG+F+  EFI
Sbjct: 509 LPVIGDFLKIEFI 521


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 367 FISFQTAGHSTPVTPLITGVSNMCFLYLCS 278
           F SF  + H++PV P+I  +S     YL S
Sbjct: 424 FTSFLLSPHNSPVVPVIQDMSRPLNEYLIS 453


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 435 IGGELELKSLIEST-YKYHLKLDYCKESIKEFYKFVKSSGRP 557
           +G  +  K LI+S  YK  +  D+C  S+ + +KF K + +P
Sbjct: 42  LGVSILKKFLIDSRDYKVEVVQDFCSRSLTDEFKF-KFTSQP 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,183
Number of Sequences: 5004
Number of extensions: 52786
Number of successful extensions: 134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)