Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29g22
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582...    31   0.60 
09_06_0098 + 20850535-20850612,20851258-20851333,20851474-208515...    31   0.79 
02_05_0830 + 32066419-32066676,32067779-32067820,32068375-320688...    29   3.2  
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668...    29   4.2  
08_02_1449 - 27174451-27178005                                         28   5.6  
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500...    28   5.6  

>02_01_0782 +
           5827364-5827441,5827733-5827787,5828761-5828849,
           5829167-5829191,5829645-5829683,5830316-5830433,
           5830857-5831023,5831155-5831518,5831589-5831701,
           5832185-5832310,5832436-5833339,5833694-5834036
          Length = 806

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 555 PCTYMHICIDDDHIGTLIFMLYADIAPNTCE 647
           P  +M + I D+    ++F L+AD+AP T E
Sbjct: 7   PIVFMDVSIGDEPDERMVFELFADVAPRTAE 37


>09_06_0098 +
           20850535-20850612,20851258-20851333,20851474-20851521,
           20851758-20851781,20851875-20851994,20852235-20852310,
           20852385-20852547
          Length = 194

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 564 YMHICIDDDHIGTLIFMLYADIAPNT 641
           Y+ + ID  HIG ++  LY D+ P T
Sbjct: 41  YLDVEIDGQHIGRIVIGLYGDVVPKT 66


>02_05_0830 +
           32066419-32066676,32067779-32067820,32068375-32068875,
           32069048-32069135,32069251-32069303,32069499-32069603,
           32069886-32069961,32070038-32070075,32070162-32070242,
           32070353-32070364
          Length = 417

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 555 PCTYMHICIDDDHIGTLIFMLYADIAPNTCE 647
           P  Y+ + I  D  G ++  LYA +AP T E
Sbjct: 33  PRCYLDVSIGGDMEGRIVVELYASVAPRTAE 63


>04_03_0961 +
           21263735-21263773,21264157-21264279,21266774-21266847,
           21266939-21267095,21267554-21267694,21267739-21267823,
           21268810-21268903,21269041-21269239,21269515-21269549,
           21270076-21270631,21270722-21270882,21271704-21271718,
           21273078-21273330,21273439-21273562,21273688-21273788,
           21274870-21274938,21275060-21275191,21275270-21275404,
           21275489-21275551,21275636-21275881,21276007-21276285
          Length = 1026

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = +3

Query: 390 YCLQSQVAVVLNGEFIGGELELKSLIESTYKYHL---KLDYCKESIKEFYKFVKS--SGR 554
           YCL       +NG+ I G   +  L   T   HL   + D+C  ++   Y  +KS     
Sbjct: 728 YCLPLSPVATINGDIINGCSLVDCLEHFTALEHLDNYRCDHCWHNVAAKYLSLKSEVDEE 787

Query: 555 PCTYMHICID 584
               +H C+D
Sbjct: 788 KINKLHTCVD 797


>08_02_1449 - 27174451-27178005
          Length = 1184

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 369 SLYHSKRQAIQHP*HL*SLGYQICVFYIYVALELNGCSK 253
           S+ H +   + H   L  L   IC+ Y   AL LNGC K
Sbjct: 594 SITHLRYLDLSHSSKLEHLPDSICMLYSLQALRLNGCLK 632


>03_05_0248 +
           22348504-22348568,22349064-22349371,22349476-22350039,
           22350082-22350128,22351244-22351715,22352349-22352611
          Length = 572

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 646 SHVFGAISAYSINIKVPMWSSS 581
           S  FG ++ + +N+ +P+WSSS
Sbjct: 355 SKKFGGVTFFDLNLPLPLWSSS 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,767,077
Number of Sequences: 37544
Number of extensions: 275431
Number of successful extensions: 633
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)