Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29g18
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 1.3
SPCC18B5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 2.2
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 26 3.8
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 26 5.1
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 6.7
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 25 6.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 8.8
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 25 8.8
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.9 bits (59), Expect = 1.3
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = -3
Query: 268 ELCALAIHDLTKHMAFSEHEMVREQRIRNIALRS--ELKITLEFRGSSPYFL-*ENVPLK 98
E A IHDL + +F +HE++R + R A+++ ++ T+E S Y + EN L
Sbjct: 216 EKSACEIHDLKESDSFKDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLI 275
Query: 97 HNKDLVKTIVSKIFMTIMGFKTHIARY*N 11
+ ++ V ++ + F+ +R N
Sbjct: 276 NEVMDMRNFVQQLEQELYAFEDDYSRIQN 304
>SPCC18B5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 116
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 456 LILAGKD-LRSFLNYTNPLYKDKLYTQHQQAFRVYMS*LLWVKTLNAVRRRFY 301
LI+ KD +R++L +++P Q+A + Y+ L W LNA+ + FY
Sbjct: 49 LIITWKDSMRAYLTFSSP----------QEAQKAYLDSLRWGSQLNAIIKPFY 91
>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 24 AMCVLK--PIIVINILETIVLTKSLLCFNGTFSYRKYGEDPLNSKVIFNSDRKAIFRMRC 197
AM ++K P + + +LE++ + + + + T + N +I ++DRK+ R+R
Sbjct: 156 AMKIVKATPQVQVFVLESVNIFRKYISYLDTIPTLVQSQAGRNDTIIIHADRKSTQRIRD 215
Query: 198 SLTISCSENAMCFVRSWM 251
++ + F W+
Sbjct: 216 AMVRGHKSQMVWFRYGWI 233
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 253 QGHIIRGWFNEAVIYPVKTTPYRIQCLYP 339
+GH+I V+YP+ +T RI YP
Sbjct: 203 RGHVILSKVAPMVLYPISSTEARILINYP 231
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/72 (22%), Positives = 29/72 (40%)
Frame = +3
Query: 105 GTFSYRKYGEDPLNSKVIFNSDRKAIFRMRCSLTISCSENAMCFVRSWMARAHNSWLVQR 284
GT + +D + V F+SD+K + + + C+E R + +
Sbjct: 119 GTLPSTRVSKDSKDDNVSFSSDKKQFYVKKEPFPVPCTEPTTSGDRYTVRMKAPTPKYST 178
Query: 285 GCYLPSKNDALP 320
+LPSK + P
Sbjct: 179 DNHLPSKKELFP 190
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 472 SDTLSTNSSW*GFTEFPELHQSALQRQTLYSASASLS 362
+ +L T+S+ FT+F L S L + SAS+SLS
Sbjct: 495 NSSLVTSST--SFTKFSSLSSSQLSTENFTSASSSLS 529
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 289 QPR*TNHELCALAIHDLTKHMAFSEHEMVREQ 194
QP HEL AL H+ A ++E+ R+Q
Sbjct: 313 QPPQPEHELAALQEHNEAHDAAMRQYELERQQ 344
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 355 HVIALVGKDIECGK 314
H+IAL+ K + CGK
Sbjct: 2099 HIIALIDKSLRCGK 2112
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 11 ILITCYVCFETHNSHK-YFRNNCF 79
+L+ CY F+T N K +FRN +
Sbjct: 318 LLLCCYYIFDTCNGQKNHFRNQIY 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,288
Number of Sequences: 5004
Number of extensions: 48810
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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