Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29g18
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0690 + 31265682-31265834,31266045-31266273,31266989-31267395     29   3.0  
07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672     28   5.2  
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910...    27   9.1  

>01_06_0690 + 31265682-31265834,31266045-31266273,31266989-31267395
          Length = 262

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 342 RAMTCKH--ERLADAEYKVCLCKADWCNS 422
           R+ T +H  ERL DA Y   +CK+ W  S
Sbjct: 94  RSCTLRHVDERLRDAGYNSAICKSKWTRS 122


>07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672
          Length = 641

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +3

Query: 120 RKYGEDPLNSKVIFNSDRKAIFRMRCSLTISCSENAMCFVRSWMARAHNSWLVQRGCYLP 299
           R   EDPL+  VIF+  RK +  +   L  +   N +    S  A+  +  + Q GC  P
Sbjct: 476 RSQSEDPLSKSVIFSQFRKMLILLEGPLK-AAGFNILRLDGSMTAKKRSEVIRQFGCVGP 534

Query: 300 SKNDALPHSM 329
                L  S+
Sbjct: 535 DSPTVLLASL 544


>06_01_1105 +
           9102059-9102167,9103770-9103907,9104125-9104267,
           9104362-9104515,9104610-9104839,9105382-9105471,
           9105606-9105779,9105873-9106010,9106212-9106349,
           9106450-9106511,9106744-9106972,9108531-9109364
          Length = 812

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 190 IRNIALRSELK-ITLEFRGSSPYFL*ENVPLKHNKDL 83
           +  +A RS LK +TLE  G SP+ + ++  + H  +L
Sbjct: 301 VLELAARSNLKSVTLELGGKSPFIIMDDADVDHAVEL 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,128,608
Number of Sequences: 37544
Number of extensions: 263437
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)