Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29g18
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58727-6|AAB00586.1|  112|Caenorhabditis elegans Hypothetical pr...    36   0.018
AF016656-1|AAB66040.1|  332|Caenorhabditis elegans Hypothetical ...    35   0.054
AF016442-5|AAT92071.1|  155|Caenorhabditis elegans Hypothetical ...    33   0.22 
Z81514-7|CAH60785.1|  167|Caenorhabditis elegans Hypothetical pr...    31   0.88 
U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC084155-1|AAG23361.2|  352|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z81136-3|CAD27610.1|  196|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AF324055-1|AAK01416.1|  151|Caenorhabditis elegans Ly-6-related ...    27   8.2  

>U58727-6|AAB00586.1|  112|Caenorhabditis elegans Hypothetical
           protein D1005.4 protein.
          Length = 112

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 339 TRAMTCKHERLADAEYKVCLCKADWCN-SGNSVNPY 443
           T  ++C+ E+L D + K C C  D+CN SG S   +
Sbjct: 51  TNGVSCQKEKLGDVDVKACCCNYDFCNLSGQSFTTF 86


>AF016656-1|AAB66040.1|  332|Caenorhabditis elegans Hypothetical
           protein C35A11.3 protein.
          Length = 332

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +3

Query: 54  INILETIVLTKSLLCFNGTFSYRKYGEDPLNSKVIFNS 167
           I+ L   +L+K+LL F+ T ++RK   DP  SK++ NS
Sbjct: 257 IDALLEKMLSKNLLLFSATITFRKVKTDPFISKILINS 294


>AF016442-5|AAT92071.1|  155|Caenorhabditis elegans Hypothetical
           protein K12B6.9 protein.
          Length = 155

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +3

Query: 273 LVQRGCYLPSKNDALPHSMSLPTRAMTCKHERLADAEYKVCLCKADWCNS 422
           +  +GC   S    LPH   L  +   C      D  Y VC C  + CNS
Sbjct: 89  ITMKGCDTVS---LLPHFAGLECKGSGCAERSEGDEIYNVCCCNTETCNS 135


>Z81514-7|CAH60785.1|  167|Caenorhabditis elegans Hypothetical
           protein F26F2.8 protein.
          Length = 167

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
 Frame = +3

Query: 204 TISCSENAMCFVRSWMARAHNS----WLVQRGCYLPSKNDALPHSMSLPTRAMTCKHER- 368
           T  C    MC    W    +NS    W+  RGCY    N   P S+  P     C H   
Sbjct: 65  TDDCGPGGMCM--KWTQAVNNSGTMSWMTFRGCYNKMFNLNDP-SVFKPPNHSFCTHSEV 121

Query: 369 ----LADAEY--KVCLCKADWCNSGNS 431
               L+D+      C C+ ++CN   S
Sbjct: 122 PLACLSDSSVIEDTCWCQGNFCNFSES 148


>U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical
           protein K05F1.1 protein.
          Length = 405

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 165 SDRKAIFRMRCSLTISCSENAMC 233
           +D+K  F  RCS TI C EN  C
Sbjct: 136 ADQKNFFYNRCSKTIKCGENEKC 158


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -1

Query: 402  YKDKLYTQHQQAFRVYMS*LLWVKTLNAVRRRFYWVDNSLVEPTTNYVPLP-SMILRSTW 226
            +KD L        R+Y S   W KTLNA+  RFY   + + E     V    S++LR   
Sbjct: 2304 FKDNLLIHSCNRERLYFS--KWFKTLNAIGNRFY---DKMTEALGADVAFENSIMLRRLA 2358

Query: 225  HFLNTKWLENNASE 184
             F   + L N A+E
Sbjct: 2359 SFETKQRLFNKATE 2372


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -1

Query: 402  YKDKLYTQHQQAFRVYMS*LLWVKTLNAVRRRFYWVDNSLVEPTTNYVPLP-SMILRSTW 226
            +KD L        R+Y S   W KTLNA+  RFY   + + E     V    S++LR   
Sbjct: 2304 FKDNLLIHSCNRERLYFS--KWFKTLNAIGNRFY---DKMTEALGADVAFENSIMLRRLA 2358

Query: 225  HFLNTKWLENNASE 184
             F   + L N A+E
Sbjct: 2359 SFETKQRLFNKATE 2372


>AC084155-1|AAG23361.2|  352|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.6 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/75 (20%), Positives = 32/75 (42%)
 Frame = +3

Query: 195 CSLTISCSENAMCFVRSWMARAHNSWLVQRGCYLPSKNDALPHSMSLPTRAMTCKHERLA 374
           C+  +   E++ CF+         S  + +GC    +   + H          C+H+  +
Sbjct: 37  CNCQMGSCESSQCFIEKKPTEIPGSMKITKGCL--RRTSRIHHG---------CEHDHFS 85

Query: 375 DAEYKVCLCKADWCN 419
           D  + +C+C+  +CN
Sbjct: 86  D--HILCVCQGSYCN 98


>Z81136-3|CAD27610.1|  196|Caenorhabditis elegans Hypothetical
           protein W02B8.5 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
 Frame = +3

Query: 273 LVQRGCYLPSKNDALP-HSMSLPTRAMTCK---------HERLADAEYKVCLCKADWCNS 422
           L  RGC L      L  H++S+  R   C+         HE       +VC C  D CNS
Sbjct: 113 LYMRGCALTIARRGLNNHTLSMFDRYDICRDMSASDLFSHEHADSQRIRVCSCLGDRCNS 172

Query: 423 GNSVNPYQ 446
             S +  Q
Sbjct: 173 AISTSNCQ 180


>AF324055-1|AAK01416.1|  151|Caenorhabditis elegans Ly-6-related
           protein HOT-3 protein.
          Length = 151

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
 Frame = +3

Query: 273 LVQRGCYLPSKNDALP-HSMSLPTRAMTCK---------HERLADAEYKVCLCKADWCNS 422
           L  RGC L      L  H++S+  R   C+         HE       +VC C  D CNS
Sbjct: 68  LYMRGCALTIARRGLNNHTLSMFDRYDICRDMSASDLFSHEHADSQRIRVCSCLGDRCNS 127

Query: 423 GNSVNPYQ 446
             S +  Q
Sbjct: 128 AISTSNCQ 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,212,233
Number of Sequences: 27780
Number of extensions: 263738
Number of successful extensions: 682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)