Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29g13
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.7  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    27   3.6  
SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual        27   3.6  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   4.7  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   6.3  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   8.3  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   8.3  

>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 439 PSTPTSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWTA 558
           PST T   ASK T  T+  AQ +S+  ++S      K TA
Sbjct: 36  PSTQTGGYASKDTTSTYEGAQPLSSQSSRSSNYTNVKITA 75


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 405 QFDCAAVDCVESFDSDLQECVKTYELDSCCSTANVCGKDAIAALKTCQVD 554
           Q     V+CV+  D DL   +K   L       ++   +A+ AL   Q D
Sbjct: 102 QIIARVVNCVKEIDDDLYNTLKEKLLSRVLDRESIVRLEAVVALSRLQED 151


>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 11  CLPNAVDASLVNNIPPDA*SL 73
           CLP +V  +L+NN+P +  S+
Sbjct: 57  CLPESVQRNLINNVPKELLSI 77


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -1

Query: 577 SPSLYVLPSTWQVFNAAIASLPQTFAVLQHESNSYVLTHSWRSESKDSTQSTAAQSNCGS 398
           +P+  + P T  +  +A A  P+ +    HES S     S  S S  S  STAA  +   
Sbjct: 4   NPNAGIQPLTNSISQSASAH-PELYHTTSHESVSTYQLQSQLSHSATSNLSTAANFHTRP 62

Query: 397 P 395
           P
Sbjct: 63  P 63


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 681 LSRNRCLCNKLSCPRSHSSRMYRCRSSLCSGA 586
           L R +C+    SC   H  +   CR+  C GA
Sbjct: 480 LPRTQCVDTPPSCCGGHCCKEESCRTENCKGA 511


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 518 GRNRSVKNLPSGRQNVQGGGDFRAPEHKEDLHLYIRLE 631
           GR    +  P G   V+GG +  +PE KE  H  I  E
Sbjct: 432 GRTFDPRFAPRGSPPVRGGKNVLSPEAKEHTHKNISPE 469


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 105 FHTNFKSNNFNKDYASGGMLFTRDASTAFGRQRL 4
           F  N  +NN+N+ YA+  M  +R   T  G + +
Sbjct: 547 FSNNIDNNNYNQPYANATMNNSRRLRTPSGERSM 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,374
Number of Sequences: 5004
Number of extensions: 63517
Number of successful extensions: 224
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)