Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29g13
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 38 0.007
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 38 0.007
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 37 0.017
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 33 0.21
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 33 0.21
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 33 0.27
Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical pr... 31 0.83
Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical pr... 31 0.83
AC006684-1|AAF39967.1| 198|Caenorhabditis elegans Hypothetical ... 30 1.9
AC084153-16|AAK84590.1| 233|Caenorhabditis elegans Hypothetical... 29 2.5
U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in bl... 29 3.4
AL033536-6|CAK55187.1| 162|Caenorhabditis elegans Hypothetical ... 29 3.4
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL021492-13|CAA16381.2| 201|Caenorhabditis elegans Hypothetical... 29 4.4
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 29 4.4
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 28 5.9
U58750-13|AAB00653.1| 616|Caenorhabditis elegans Hypothetical p... 28 5.9
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 28 5.9
U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr... 28 5.9
AC024817-54|AAF59564.1| 229|Caenorhabditis elegans Hypothetical... 28 5.9
Z83102-6|CAB05461.1| 417|Caenorhabditis elegans Hypothetical pr... 28 7.8
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 37.9 bits (84), Expect = 0.007
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 3/138 (2%)
Frame = +3
Query: 153 AVSSDMAGECNMSAFYLELGCTPIPSVDNTTICPDAFKCPDLHPDPTMCYYRGASYTDRS 332
+ S+ A +C+ F CT +D+ +C F C D + ++C+ S ++
Sbjct: 3178 SASAQKASKCSNGQFQ----CTSGECIDDAKVCDRNFDCTDRSDESSLCFIDECSLAEK- 3232
Query: 333 PLPQNLIKNPCSQACSCRISDGEPQFDCAAVDCVESFDSDLQECVKTYELDSCCSTANVC 512
PL C Q C D + + C DC E F D+ + + ++ C + C
Sbjct: 3233 PL--------CEQKC----MDMKIGYKC---DCFEGFAIDISDQKSCHNVNECYEGISGC 3277
Query: 513 GK---DAIAALKTCQVDG 557
+ D I + K VDG
Sbjct: 3278 SQKCDDKIGSYKCGCVDG 3295
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 37.9 bits (84), Expect = 0.007
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 3/138 (2%)
Frame = +3
Query: 153 AVSSDMAGECNMSAFYLELGCTPIPSVDNTTICPDAFKCPDLHPDPTMCYYRGASYTDRS 332
+ S+ A +C+ F CT +D+ +C F C D + ++C+ S ++
Sbjct: 3178 SASAQKASKCSNGQFQ----CTSGECIDDAKVCDRNFDCTDRSDESSLCFIDECSLAEK- 3232
Query: 333 PLPQNLIKNPCSQACSCRISDGEPQFDCAAVDCVESFDSDLQECVKTYELDSCCSTANVC 512
PL C Q C D + + C DC E F D+ + + ++ C + C
Sbjct: 3233 PL--------CEQKC----MDMKIGYKC---DCFEGFAIDISDQKSCHNVNECYEGISGC 3277
Query: 513 GK---DAIAALKTCQVDG 557
+ D I + K VDG
Sbjct: 3278 SQKCDDKIGSYKCGCVDG 3295
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 36.7 bits (81), Expect = 0.017
Identities = 24/70 (34%), Positives = 33/70 (47%)
Frame = +1
Query: 436 SPSTPTSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWTAKRTGRGRFSSPRTQGRPAS 615
+P T T+R+ RT + A RT+ R +P K A RT R + +P T P +
Sbjct: 545 APETVTTRTEPPRTEPPRTIPPRTEAPRTEPPRTEPPKTEAPRTVRPKTEAPMTV-PPRT 603
Query: 616 VHPTGVAPRT 645
P APRT
Sbjct: 604 EPPMTEAPRT 613
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 481 WTHVAAQQMSAARTQSQR*KPAKWTAKRTGRGRFSSPRTQGRPASVHPTGVAPRT 645
WT A + RT+ R +P + RT R PRT+ P + P V P+T
Sbjct: 540 WTRTEAPETVTTRTEPPRTEPPRTIPPRTEAPRTEPPRTE-PPKTEAPRTVRPKT 593
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 327 RSPLPQNL-IKNPCSQACSCRISDGEPQFDCAAVDCVESFDSDLQECVKTYELDSCCSTA 503
+S L +NL + +PC +C D + C C + F+ D+ E K L++ CS
Sbjct: 499 KSSLSENLCLSDPCMNNATCIDVDAHIGYACI---CKQGFEGDICERHKDLCLENPCSNG 555
Query: 504 NVC 512
VC
Sbjct: 556 GVC 558
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 327 RSPLPQNL-IKNPCSQACSCRISDGEPQFDCAAVDCVESFDSDLQECVKTYELDSCCSTA 503
+S L +NL + +PC +C D + C C + F+ D+ E K L++ CS
Sbjct: 499 KSSLSENLCLSDPCMNNATCIDVDAHIGYACI---CKQGFEGDICERHKDLCLENPCSNG 555
Query: 504 NVC 512
VC
Sbjct: 556 GVC 558
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 32.7 bits (71), Expect = 0.27
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Frame = +3
Query: 366 SQACSCRISDGEPQFDCAAVD-CVE-SFDSD-LQECVKTYELDSC--CST-ANVCGKDAI 527
S SCR + QF C+ D C+ S D + +C + +C C A+ CGK+ I
Sbjct: 207 SDEASCRSKCSKDQFKCSGSDACLPISVKCDGVSDCENESDESNCNKCQKGAHKCGKNCI 266
Query: 528 AALKTCQVDGKTYREGEIFEPQNTRKTCICTSDWSGSADNSAYCRDIDC 674
A K C DG + E Q KTC SGS A C D C
Sbjct: 267 KASKVC--DGIPDCDDGSDEHQCDCKTC------SGS--EKALCEDGTC 305
>Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical
protein F32A7.5c protein.
Length = 877
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 255 DAFKCPDLHPDPTMCYYRGASYTDRSPLPQNLIKNP 362
DAFK P+ HP+P + G S D+ P P + K P
Sbjct: 462 DAFKKPEPHPEPNV---SGGSEEDKIPEPVDAFKKP 494
>Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical
protein F32A7.5a protein.
Length = 878
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 255 DAFKCPDLHPDPTMCYYRGASYTDRSPLPQNLIKNP 362
DAFK P+ HP+P + G S D+ P P + K P
Sbjct: 462 DAFKKPEPHPEPNV---SGGSEEDKIPEPVDAFKKP 494
>AC006684-1|AAF39967.1| 198|Caenorhabditis elegans Hypothetical
protein T02H6.9 protein.
Length = 198
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 466 THSWRSESKDSTQSTAAQSNCGSPSEMRQLHAWEHG 359
+ SWR +KD + + CG P R+ ++W G
Sbjct: 113 SESWRGGNKDDVAANNFAAYCGRPEAPRRRYSWIQG 148
>AC084153-16|AAK84590.1| 233|Caenorhabditis elegans Hypothetical
protein Y22D7AL.16 protein.
Length = 233
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Frame = -2
Query: 699 CPG-NVFLSRNRC----LCNKLSCPRSHSSRMYRC 610
CPG S N C CNK +CP HS+R C
Sbjct: 185 CPGAKCIYSHNMCRYEDTCNKSTCPFDHSNRPRTC 219
>U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 10 protein.
Length = 375
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Frame = +3
Query: 324 DRSPLPQNLIKNPCSQACSCRISDGEPQFDCAAVD---CVESFDSDLQECVKTYELDSCC 494
D +P+ QN AC C +P DCA V C + +C + + CC
Sbjct: 202 DCAPVQQNPCCQQAQPACDCAPVQQQPACDCAPVQQNPCCQQQAQSTCDCAPVQQ-NPCC 260
Query: 495 STA 503
A
Sbjct: 261 QQA 263
>AL033536-6|CAK55187.1| 162|Caenorhabditis elegans Hypothetical
protein Y53C10A.15 protein.
Length = 162
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -1
Query: 586 SKISPSLYVLPSTWQVFNAAIASLPQTFAVLQHESNSYVLTHSWRSESKDS 434
SKI P+L + PS + VFN L + +L+H + + +SKDS
Sbjct: 33 SKI-PNLLMEPSKYFVFNGPFDKLSMDYFILRHPEFQRIAYNVTLKQSKDS 82
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 28.7 bits (61), Expect = 4.4
Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Frame = +3
Query: 234 DNTTICP-----DAFKCPDLHPDPTMCYYRGASYT-DRSPLPQNLIKNPCSQACSCRISD 395
D TT C D P L D C S D + + +P Q C R +
Sbjct: 2054 DGTTACSKKSTADCISLPSLCADKAKCDNSTRSCECDAGYIGDGYVCSPHPQDCVLRDNL 2113
Query: 396 GEPQFDCA--AVDCVESFDSDLQECVKTYELDSCCS 497
P+ C C+ F D +CV +E S CS
Sbjct: 2114 CSPEAVCQNRRCQCLPGFTGDGVKCVSIHERASNCS 2149
>AL021492-13|CAA16381.2| 201|Caenorhabditis elegans Hypothetical
protein Y45F10D.6 protein.
Length = 201
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 537 KTCQVDGKTYREGEIFEPQNTRKTC 611
K C+ +G +Y+ GE F+ N R TC
Sbjct: 46 KVCKKNGHSYKVGEEFDVGNLRYTC 70
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = -2
Query: 702 FCPGNVFLSRNRCLCNKLSCPRSHSSRMYRCRSS-----LCSGARKSPPPCTFCRPLGRF 538
F ++ + R +CN C S+ + +C SS +CS RKS CR RF
Sbjct: 281 FTTFGLYHHQRRQMCNSTGCSYLSSTGIRQCNSSKCISCVCSNYRKSDG----CRSSSRF 336
Query: 537 LT 532
LT
Sbjct: 337 LT 338
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 28.3 bits (60), Expect = 5.9
Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 10/190 (5%)
Frame = +3
Query: 177 ECNMSAFYLELGCTPIPSVDNTTICPDAFKCPDLHPDPTMCYYR-GASYTDRSPLPQNLI 353
+C S +L C P +DN C ++ KC D + + C G S S L +
Sbjct: 1709 DCTSSG-WLGDHCEIQPKLDNCLYCQNSVKCFDTFTNYSRCQCAPGFSGDYCSDLIDDCF 1767
Query: 354 KNPCSQACSCRISDGEPQFDCAAVDCVESFDSDLQECVKTYELDS----CCSTANVCGKD 521
PC +C I + ++ +ES++ Q +S C+ C
Sbjct: 1768 FEPCFNGGTCSIFN----YNTTTKVSIESYNCTCQTGYFGTNCESRIHPSCTDLITCQNG 1823
Query: 522 AIAALKT-----CQVDGKTYREGEIFEPQNTRKTCICTSDWSGSADNSAYCRDIDCGLEI 686
L + CQ + Y I+ ++ + C+ +S S++ + +C D G
Sbjct: 1824 GTCQLTSFDTAVCQCTDQFY---GIYCEKSCSEQCVHSSGCKQSSNGTVFCECYD-GFTS 1879
Query: 687 HYQDKIFDNC 716
D++ D C
Sbjct: 1880 TRCDEVCDVC 1889
>U58750-13|AAB00653.1| 616|Caenorhabditis elegans Hypothetical
protein F55G1.13 protein.
Length = 616
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Frame = +3
Query: 486 SCCSTANV-CGKDAIAALK---TCQVDGKTYREGEIFEPQNTRKTCICTSDWSGSADNS- 650
S C+ +N+ G A+ +L T + G+ G+ + T TC+C +GSA S
Sbjct: 265 STCAYSNLNSGFAAVYSLNDLCTPEPCGEAAGNGKCIQTSATAYTCLCNPIKTGSACQSD 324
Query: 651 ---AYCRDIDCGL 680
C IDCG+
Sbjct: 325 ATLTPCASIDCGV 337
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Frame = -2
Query: 666 CLCNKLSCPRSHSSRMYRCRSSLCSGARK--SPPPCT-FCRP 550
C C ++ P + C GARK P PCT C P
Sbjct: 299 CFCGRMRNPNFRVGEVPHSCGETCGGARKFGCPHPCTELCHP 340
>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical
protein F40F4.6 protein.
Length = 2214
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 567 REGEIFEPQNTRKTCICTSDWSGSADNSAYCRDIDC 674
+ G + P NT TC CT +++G+ YC++I C
Sbjct: 842 QNGGVMNPSNT--TCFCTPEFTGT-----YCQNIIC 870
>AC024817-54|AAF59564.1| 229|Caenorhabditis elegans Hypothetical
protein Y54G2A.27 protein.
Length = 229
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 433 WSPSTPTSRSASKRTNWTHVAAQQMSAARTQS 528
WSPS+P S +R W+ ++ +S R ++
Sbjct: 195 WSPSSPHSVHCHRRVGWSSSSSSPLSRCRARA 226
>Z83102-6|CAB05461.1| 417|Caenorhabditis elegans Hypothetical
protein C54C8.7 protein.
Length = 417
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 532 AAIASLPQTFAV-LQHESNSYVLTHSWRSESKDSTQSTAAQSNCGS 398
A + LP TFA H N Y T S ++ QST AQ+ CG+
Sbjct: 149 AFVCELPTTFADNCLHNYNGYCYTFSSSPQTFIGAQSTCAQT-CGN 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,887,535
Number of Sequences: 27780
Number of extensions: 389972
Number of successful extensions: 1529
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1516
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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