Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29g12
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom...    98   9e-22
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    30   0.34 
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       26   4.2  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   5.5  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.3  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   7.3  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   9.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   9.6  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   9.6  

>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 163

 Score = 98.3 bits (234), Expect = 9e-22
 Identities = 45/105 (42%), Positives = 67/105 (63%)
 Frame = +3

Query: 342 KMSSVLPFFLEGEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPV 521
           K+ S  P   EG+VV GFGRGSKELG PTAN   + ++ L +  + GVY+G+A V    V
Sbjct: 17  KVQSPYPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMVQK-RV 75

Query: 522 YEMVANIGWCPFYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYL 656
           + MV ++GW P+Y+NK  S E H++     DFY   +++ ++GY+
Sbjct: 76  FPMVMSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYI 120


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = -1

Query: 645 LEQFLN*NHRNHPGNCALYGFQQTSLYFGKKDTILYLLPSHIQVLCQLEPIHNKHLAPNL 466
           L+ + N  HR     CAL  F++T +  G+ D +L + P HI+   Q+       L   +
Sbjct: 631 LKFYFNLLHRKVRNGCALLHFKETEILEGEWDFLLAVCP-HIEHGFQIMSKSLSSLVGEI 689

Query: 465 LVKILQLPKD 436
           L  I +  KD
Sbjct: 690 LTNINRYLKD 699


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 214 IHLGHKLRMI*VIYNDNLKVIKIHRLIITNYKPYHSHNLETT 89
           I LGHK+ +I   Y D + V  +   +   Y P H+   ETT
Sbjct: 25  IDLGHKVIVITHAYKDRVGVRYLTNGLTVYYVPLHTVYRETT 66


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 585 FQQTSLYFGKKDTILYLLPSHIQVLC 508
           FQ  + +F KK+ ++  +  H Q+LC
Sbjct: 142 FQANTYFFKKKEDLIPFIEEHWQLLC 167


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -2

Query: 539 ICYHLIYRSCVNLSPSIINTWLQTFW*RFYNFQRIISCWAS 417
           +C+ L+YR+  +    ++  +L   +   + F R+ SC++S
Sbjct: 59  LCFFLVYRTTYSFGVCLMKRFLFNKFFNRHPFTRVKSCFSS 99


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 1   DLIMIF*SKLTVNTMKACLNFKGNVC 78
           DL  IF  KL   T   CL F  N C
Sbjct: 432 DLFKIFIQKLASPTFLECLGFADNFC 457


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 314 SHENIFSIEENVISSAFFP*RRGS 385
           SH+N +S+ E  +S  FF   RG+
Sbjct: 150 SHQNSYSLNETYLSYDFFDNHRGA 173


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 469 PFGKDFTTSKG*LAVGHPSSLEPLPKPLTTSPSRKK 362
           P+G +   S     V   S  EP+  PLT+ P+ KK
Sbjct: 639 PYGNNPLFSSTTSQVAPTSIQEPIASPLTSKPTPKK 674


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +3

Query: 477 PGVYYGWAQVDTGPVYEMVANIGWCPFYQNKEMSVETHIMHN 602
           PGV+ G   + TG + +   ++  CP      +++   I+ N
Sbjct: 80  PGVFEGIVNLTTGKIEKWEHSVDTCPIITADLLAITDEIVRN 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,354
Number of Sequences: 5004
Number of extensions: 56211
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)