Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29g11
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 35 0.011
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 34 0.026
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 33 0.061
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 33 0.061
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 32 0.11
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 29 0.99
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 29 0.99
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 28 1.7
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 28 1.7
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 28 1.7
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 28 1.7
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.3
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi... 27 2.3
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 2.3
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 3.0
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 27 4.0
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 4.0
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 27 4.0
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 4.0
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 26 5.3
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 26 5.3
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.3
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 26 5.3
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 26 7.0
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 9.3
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 25 9.3
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.3
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 9.3
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 9.3
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 35.1 bits (77), Expect = 0.011
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = -2
Query: 662 W*LRSFLTVS--SLKYFVFKIFQYCFLISSSSAVILTILFFLVSLLIS 525
W RSF+T + F+F +F + F ISSSS + +L+F SLLIS
Sbjct: 554 WWWRSFITPGFCGIYVFIFSVFYWFFKISSSS-LATAVLYFGYSLLIS 600
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 33.9 bits (74), Expect = 0.026
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 205 PSSDMSADETSTPKNNKTLDVSDESGHELEADVDDIKEKKFLDEAIKAILDPHAFIPKNQ 384
P S++ ++ P +NK + +D L+ D D + EK+ +++K + ++ I +
Sbjct: 81 PISELEKEKLERPLSNKKKEKNDHKAESLKHDYDSVGEKRISKDSVKHLDKTYSSIDSKK 140
Query: 385 D 387
D
Sbjct: 141 D 141
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 32.7 bits (71), Expect = 0.061
Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 7/147 (4%)
Frame = +1
Query: 313 KEKKFLDEAIKAILDPHAFIPKNQDELESYKLQLDELNKSNISLDSFLSEMDNL--SLEV 486
K + LD+ +K + A + ++ K L E+++ N + SF+ E++ L S++
Sbjct: 104 KSEVELDKHVKQL---QAAVDSGTLKIVDEKKYLREISQCNRTRKSFV-ELNALQTSIDT 159
Query: 487 CKTSQKALWSYVSDINNETKKNKMVRITAEEDEIKKQ----YWNILKTKYLRDD-TVKND 651
+ L ++D ++ +K V I +E DE++KQ Y + K RDD D
Sbjct: 160 IRNELNELRDQLNDSESKKLSDKFVEIRSELDEVRKQQDGYYKDQRKLIAERDDEKTALD 219
Query: 652 RNYQRKIRIIKERGTNVQMPQSKQREE 732
Y ++ + +E T ++ ++ +RE+
Sbjct: 220 DLYNQRRALQREYDTQLRAFRTYEREQ 246
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 32.7 bits (71), Expect = 0.061
Identities = 40/187 (21%), Positives = 91/187 (48%), Gaps = 9/187 (4%)
Frame = +1
Query: 220 SADETSTPKNNKTLDVSDESGHELEADVDDIKEKKFLDEAIKAILDPHAFIPKNQDELES 399
+AD+ + + + +++SD G ELE D D I+++K A+ + + I K D++
Sbjct: 57 TADQENESEGSDEVELSDLEGIELEEDADLIRKRKLAINNTVALENIYERI-KYPDDISF 115
Query: 400 YKLQLDELNKSNISLDSFLSEMDNLSLEVC-----KTSQKALWSYVSDINNETKK--NKM 558
+ Q K I +++ D+L+ E+ +S KA ++ + + N + +
Sbjct: 116 VENQA-VTTKEPIIIENV---EDDLARELAFYKQGVSSVKAAFAKLREANVLISRPHDYF 171
Query: 559 VRITAEEDEIKKQYWNILKTKYLRDDTVKNDRNYQRKIRIIKERGTNVQM--PQSKQREE 732
+ +D ++K ++ + +++ T K +K R +K+ G VQ+ + +QRE+
Sbjct: 172 AEMLKSDDHMEK-----VRQELIKEATAKKLSQQAKKQRELKKFGKQVQLAKQEERQREK 226
Query: 733 IDLMQRI 753
+ +++I
Sbjct: 227 KETLEKI 233
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 31.9 bits (69), Expect = 0.11
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 163 GIISTAVSVQFQTNPSSD-MSADETSTPKNNKTLDVSDESGHE 288
GII+ Q ++PS D +S E STP + T+DV+D E
Sbjct: 3 GIITPQKQKQLMSSPSRDPLSTTELSTPTSQTTVDVNDTKKSE 45
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 28.7 bits (61), Expect = 0.99
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 493 TSQKALWSYVSDINNETKKNKMVRITAEEDEIK 591
T+QK W Y DI E+ + K + EE+EI+
Sbjct: 1280 TTQKLFWPYDVDIIRESYRTKRLHELDEEEEIE 1312
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 28.7 bits (61), Expect = 0.99
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +1
Query: 250 NKTLDVSDESGHELEADVDDIKEKKFLDEAIKAILDPHAFIPKNQDELESYKLQLDELNK 429
+K +D SDE ++ ++ ++ +KFL ++ P IP E++ LD
Sbjct: 129 DKKVDGSDEESRMMQKNLTELIYQKFL-----LVVQPRHLIPVGDQEMQLRIKHLDRRKS 183
Query: 430 SNISLDSFLSEM-DNLSLEV 486
N+S E+ D+++LE+
Sbjct: 184 ENVSEIKKNREVDDSVALEM 203
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 277 FHRRHLKFYYFSVCSSRLLTYLTKDLFG 194
F RR L + F C+S +L YL+ +FG
Sbjct: 267 FFRRMLNAFIFIFCASPMLHYLSNIIFG 294
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 277 FHRRHLKFYYFSVCSSRLLTYLTKDLFG 194
F RR L + F C+S +L YL+ +FG
Sbjct: 267 FFRRMLNAFIFIFCASPMLHYLSNIIFG 294
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 277 FHRRHLKFYYFSVCSSRLLTYLTKDLFG 194
F RR L + F C+S +L YL+ +FG
Sbjct: 239 FFRRMLNAFIFIFCASPMLHYLSNIIFG 266
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 277 FHRRHLKFYYFSVCSSRLLTYLTKDLFG 194
F RR L + F C+S +L YL+ +FG
Sbjct: 267 FFRRMLNAFIFIFCASPMLHYLSNIIFG 294
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 2.3
Identities = 22/85 (25%), Positives = 43/85 (50%)
Frame = +1
Query: 457 SEMDNLSLEVCKTSQKALWSYVSDINNETKKNKMVRITAEEDEIKKQYWNILKTKYLRDD 636
+ +D LSL+ TS L +Y S NE K+ K I +E+++ + + T++ + +
Sbjct: 22 NSIDGLSLKKT-TSPFILTAYPS---NEEKEVKETDIVPDENKVNELDVHKQSTEFSKQE 77
Query: 637 TVKNDRNYQRKIRIIKERGTNVQMP 711
+ ND + I++I E + +P
Sbjct: 78 SASNDDD--TNIQLIPENNMKIVVP 100
>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +1
Query: 376 KNQDELESYKLQLDELNKSNISLDSFLSEMDNLSLEVCKTSQKALWSYVSDINNETKKNK 555
K ELE+ L L E SN+SL S++ + + K S + + D + + +N+
Sbjct: 9 KLDSELEAKVLHLLEGQVSNLSLPSYIKHLKVVDFHFGKVSPQITIQEIGDPDPQFYENE 68
Query: 556 MVRITAEEDE 585
+ +E E
Sbjct: 69 AFELANQELE 78
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.5 bits (58), Expect = 2.3
Identities = 23/124 (18%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Frame = +1
Query: 388 ELESYKLQLDEL--NKSNISLDSFLSEMDNLSLEVCKTSQKALWSYVSDINNETKKNKMV 561
E+ + + DEL K+N+ ++ + + D SL S S + +++++
Sbjct: 1777 EIGDIRTKFDELVLEKTNLLKENSILQADLQSLSRVNNS--------SSTAQQNAQSQLL 1828
Query: 562 RITAEEDEIKKQYWNILKTKYLRDDTVKNDRNYQRKIRIIKERGTNVQMPQSKQREEIDL 741
+TA+ E+++ + K + D ++ +RN +RK+ + E+ ++ +EI++
Sbjct: 1829 SLTAQLQEVREANQTLRKDQ---DTLLRENRNLERKLHEVSEQLNKKFDSSARPFDEIEM 1885
Query: 742 MQRI 753
+ +
Sbjct: 1886 EKEV 1889
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +1
Query: 583 EIKKQYWNILKTKYLRDDTVKNDRNYQRKIRIIKERGTNVQMP 711
++ +YW I KTK +R+ + N+R + ++ I+ ++ P
Sbjct: 509 DVATEYWKI-KTKDIRESHILNNRRILKSLQFIETELPMIRKP 550
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 304 DDIKEKKFLDEAIKAILDPHAFIPKNQDELESYKLQLDELNKSNISLDSFLSEMD 468
D +K K D AFI + Q+ELE + D+L +S SE D
Sbjct: 175 DQLKVGKLEDTLYLGPTTSEAFIERLQNELELESISEDDLYSKRLSPSVSYSEFD 229
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 436 ISLDSFLSEMDNLSLEVCKTSQKALWSYVSDI 531
ISL S + LSL+ CK +K LW +S +
Sbjct: 1136 ISLRRGWSSVATLSLDTCKMIEKRLWPTMSPL 1167
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 259 LDVSDESGHELEADVDDIKEKKFLDEA-IKAILDPHAFIPKNQDELESY 402
+ + D+ +EL +V + E + E + L H +PK+Q +LE+Y
Sbjct: 405 ITIPDDGLNELNNNVVEKAEPAPVSEIPLSKTLTSHKIVPKHQVDLENY 453
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = -2
Query: 653 RSFLTVSSLKYFVFKIFQYCFLISSSSAVILTI 555
RS LT S VF Y F ISSSS I+ I
Sbjct: 232 RSTLTFSFYPKHVFSTSHYVFAISSSSLQIIDI 264
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.6 bits (56), Expect = 4.0
Identities = 19/79 (24%), Positives = 40/79 (50%)
Frame = +1
Query: 364 AFIPKNQDELESYKLQLDELNKSNISLDSFLSEMDNLSLEVCKTSQKALWSYVSDINNET 543
A +PK + +L K D+L KS+ + + LS++ E+ K + L + I+ +
Sbjct: 503 AEVPKLESQLSQVKKSNDDLQKSSRDVAANLSDVKAKVSEIRKAYDEEL-AKAKQISLDI 561
Query: 544 KKNKMVRITAEEDEIKKQY 600
+ NK A+ +++ ++Y
Sbjct: 562 ETNK-----AQTEQVNREY 575
Score = 25.4 bits (53), Expect = 9.3
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Frame = +1
Query: 274 ESGHELEADVDDIKEKKFLDEAIKAILDP-HAFIPKNQDELESYKLQLDELNKSNISLD- 447
+ G LE V + + K + E+ A + + + + L LQLDE+ + +SLD
Sbjct: 591 QKGEVLEQVVAESEAAKNMVESSNASIQQLKSEVADKEQTLAQLHLQLDEMTQRLVSLDE 650
Query: 448 -SFLSEMDNLSLEVCKTSQKALWSYVSDINNETKKNKMVRITAEEDEIKK 594
S L LE + K + ++ +E K ++ AE+ E+ K
Sbjct: 651 ESKAVSQRKLDLEYKINNSKTQLATATEEYHEHSK----QLEAEKQELSK 696
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 196 QTNPSSDMSADETSTPKNNKTLDVSDESGHELEADV 303
Q N S++E +T +NN +V DE+ ++LE+ V
Sbjct: 250 QVNDEKKQSSEEDTT-ENNSAAEVIDETVNDLESAV 284
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 289 LEADVDDIKEKKFLDEAIKAILDPHAFIPKNQDELESYKL 408
L A + ++KK LD KA L PK +D+L YK+
Sbjct: 492 LTACLASSRKKKGLDAIDKAFLKALRNYPKAKDQLSKYKV 531
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Frame = +1
Query: 604 NILKTKYLRDDTVKNDRNY---QRKIRIIKERGTNVQM---PQSKQREE 732
N ++ K+LRD K+ +N+ +RK+ I + G N + P+++ R+E
Sbjct: 34 NNVRLKFLRDRLHKSLKNFDSVKRKVEIANDEGNNKLLKSSPKAQTRDE 82
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 202 NPSSDMSADETSTPKNNK 255
NPSS + ++ +STPK NK
Sbjct: 182 NPSSVLPSNSSSTPKENK 199
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 337 AIKAILDPHAFIPKNQDELESYKLQLDELNKSNISLDSFLSEMDNLSLEVCKTSQK 504
AIK +DP A +N++ E K + + K+ IS + E+D + +V S K
Sbjct: 746 AIKFTVDPVALRARNEESNEENKKPVIKNGKAEISAEPTKEEIDIYNEKVLACSIK 801
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +1
Query: 274 ESGHELEAD-VDDIKEKKFLDEAIKA---ILDPHAFIPKNQDELESYKLQLDELNKSN 435
+SG L ++ DD++E + L E ++ I + + I K + + +KL DEL + N
Sbjct: 206 KSGIPLSSEHSDDVEEDRVLSEKMELFQWITEENLDIKKQKSSSKFFKLAADELRRIN 263
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 457 SEMDNLSLEVCKTSQKALWSYVSDINNETKK-NKMVR 564
S++ N E K +KA W ++S+ +NE KK N +R
Sbjct: 722 SDLRNCDFEPVK-KRKADWDHLSNHDNEVKKENNRIR 757
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.4 bits (53), Expect = 9.3
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +1
Query: 247 NNKTLDVSDESGHELEADVDDIKEKKFLDEAIKAILDPHAFIPKNQDELESYKLQLDELN 426
N+ +L VS + H + DV+ + F LDP + I L LQ L
Sbjct: 17 NSSSLPVSSKFSHTNDPDVEGVDNDSFSKALCNKDLDPSSTIRSVISSLLD-SLQDKALQ 75
Query: 427 KS-NISLDSFLSE 462
+S N SL L E
Sbjct: 76 QSPNTSLSKLLLE 88
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 373 PKNQDELESYKLQLDELNKSNISLDS 450
PK+ ++LE + Q+ + KSN+ LD+
Sbjct: 192 PKSFEQLEQLEAQIQKKLKSNVPLDT 217
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 469 NLSLEVCKTSQKALWSYVSDINNETKKNKMVRITAEEDEIKKQ 597
N L+VC T + A+W+Y N+ T+ N V ++++ + + Q
Sbjct: 321 NSVLDVCTTWEDAMWAY---YNSMTQYNLDVYLSSKAPQTETQ 360
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.4 bits (53), Expect = 9.3
Identities = 17/79 (21%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +1
Query: 199 TNPSSDMSADETSTPKNNKTL-DVSDESGHELEADVDDIK-EKKFLDEAIKAILDPHAFI 372
+ P+ +AD+ + ++ + + +D G L+ + ++K +KK ++ I+ ++D +
Sbjct: 1763 SGPAGLAAADQLNRAGHHVVIYERADRPGGLLQYGIPNMKLDKKVVERRIQLMIDEGIEV 1822
Query: 373 PKNQDELESYKLQLDELNK 429
N + ++ + LDEL+K
Sbjct: 1823 LTNVEVGKNGDVSLDELHK 1841
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,643
Number of Sequences: 5004
Number of extensions: 63313
Number of successful extensions: 299
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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