Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29g07
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    29   0.37 
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   2.0  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   2.0  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    27   2.0  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    26   3.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.0  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.9  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   7.9  
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    25   7.9  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   7.9  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   7.9  

>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 362 SQPRPVLP---RSKCQRTNATESSGRRHSRRTSV 454
           S P P  P   +S C +TN  ESS  RHS++ S+
Sbjct: 71  SYPLPSAPPNFKSVCTKTNHPESSSSRHSKKKSM 104


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 572 DVPEKMQGDETVRESAIRARSKRCSSTSFTGEAIPEIILQXMSVCCDD 429
           D P   +   + RES+++ +S+       T E I  I    MS  CDD
Sbjct: 149 DSPATKKSRRSYRESSLKRKSQLILENVGTDEKIINISETKMSALCDD 196


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
 Frame = +1

Query: 274  IIRDCYVNEAETLLMYRGCDESESRATMSVTASTCSSTQQVPAHQRDRELRSSSQQTDIX 453
            I  + Y+N      +        S A +    S CS   Q+ + + +     S  +    
Sbjct: 793  IASNYYINYQTVSTLNNLLKSKMSEADIIALLSQCSEFSQIKSRENEHRELESLMENSSP 852

Query: 454  CRI---ISGIASPVNEVEEQRLLRARIAD 531
            C++   IS  +  VN + +  + RA + D
Sbjct: 853  CQLRDSISNTSGKVNVILQSYISRAHVED 881


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -2

Query: 426 PELSVALVRWHLLRGRTGRGCDAHGGPTLGLVAAPVHQQGFSLIHVT 286
           P +++  +   LL+      C +   PT+G    P H +G+S   +T
Sbjct: 325 PNVAMKYILRKLLKVLDASMCHSKAAPTIGYNIKPKHAEGYSSNEIT 371


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 169 DVRQAVLSSASLRPRIQEALERINFRFHRTCSFSNIIRDC 288
           DV  + L   ++  +  ++  ++N   H T  + NI RDC
Sbjct: 309 DVLHSALGLYAMAYQDDKSFPKVNADIHMTSKYINICRDC 348


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +1

Query: 256 TCSFSNIIRDCYVNEAETLLMYRGCDESESRATMSVTASTCSSTQQVPAHQRDRELRSSS 435
           T  F ++ R+  +   +T+L  +  +       MS+     S   ++  H+ +R    S+
Sbjct: 490 TIPFDSLSRNLSLT-VQTVLYLKNRNFQTGNEVMSILGPCLSFLMKLSTHKNERIACLSA 548

Query: 436 QQTDIXCRIISG--IASPVNEVEEQRLL 513
            Q    C I S   +  PV E+ ++ L+
Sbjct: 549 SQLITVCHIFSDTTLIKPVKELFQKYLV 576


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 458 LQXMSVCCDDDRSSLSRWCAGTC 390
           L   SVC D    S S W  GTC
Sbjct: 194 LYECSVCTDTINPSTSIWSCGTC 216


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 498 RTAFAASSYCRF-PDSFIPLH 557
           +TA A+ SY  + PDS+IP+H
Sbjct: 315 KTAKASGSYRLYLPDSYIPIH 335


>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 392 KCQRTNATESSGRRHSRRTSV 454
           + QRT ATE+ GR H+   SV
Sbjct: 217 RVQRTPATETKGRVHTSTASV 237


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 508 NAVLPLHLLERRSQRLFCNXCPSAVTTTGALCRVGALALAAW 383
           NA+  ++++   S  L C   PSAV  T  +   GA + AA+
Sbjct: 448 NAITVIYIV---SALLLCTILPSAVAFTSLVSAAGAPSFAAY 486


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 534 GIGNTSSQQTLFFHFIYWRGDPRDYSATDV 445
           G+GN  S  T +  +  W GDP    + DV
Sbjct: 481 GLGNLGSVVTTYALYSGWPGDPTFRKSNDV 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,483
Number of Sequences: 5004
Number of extensions: 46983
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)