Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29g07
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 29 2.0
09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354... 25 3.1
03_05_0055 - 20316184-20317349,20317786-20317926,20318097-203182... 29 3.5
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 28 6.1
02_05_1165 + 34630369-34630431,34630771-34630855,34631212-346313... 28 6.1
02_05_0903 - 32630190-32630461,32631084-32631470,32631727-326318... 28 6.1
10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228... 27 8.1
06_03_1201 + 28359286-28359452,28360018-28360075,28361060-283611... 27 8.1
02_05_1335 - 35770403-35770543,35770630-35770755,35770859-357709... 27 8.1
01_01_0459 + 3400288-3400729,3400760-3400806,3401055-3401141,340... 27 8.1
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 315 DVPGLRRVRESGHHERHSLDLFFHAASASAPTR 413
D+ LR +R++ ++R +L +F AASAS PT+
Sbjct: 1508 DLHELRTLRDALDYDRSALVRYFSAASASFPTK 1540
>09_06_0187 +
21433842-21433887,21434504-21435246,21435437-21435484,
21435929-21436814,21436967-21437056,21437543-21438417
Length = 895
Score = 25.4 bits (53), Expect(2) = 3.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 91 KMNRFITRNCFVNSNQADDFTRQTVQDVRQAVLSSASLRPRIQEALE 231
K+N N ++ QA + T V + +A L+SAS + + E LE
Sbjct: 248 KLNFTSELNTICSALQAVNLTSTEVSSIPRAKLNSASYKDALPEILE 294
Score = 21.8 bits (44), Expect(2) = 3.1
Identities = 11/41 (26%), Positives = 14/41 (34%)
Frame = +1
Query: 268 SNIIRDCYVNEAETLLMYRGCDESESRATMSVTASTCSSTQ 390
S I CYVNE + C E V ++ Q
Sbjct: 334 STIDAACYVNEPRMQSFHEACSEHHLLRGQGVAGKAFTTNQ 374
>03_05_0055 -
20316184-20317349,20317786-20317926,20318097-20318222,
20318382-20318429,20318536-20318640,20318746-20318890
Length = 576
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 145 DFTRQTVQDVRQAVLSSASLRPRIQEALERIN 240
DF RQT D + L RP + EAL+ +N
Sbjct: 544 DFIRQTFMDKQNVKLDCKRFRPILLEALDNLN 575
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +1
Query: 142 DDFTRQTVQDVRQAVLSSA--SLRPRIQEALERI 237
DD+ R+ + D Q +LSSA +LRPR E L+R+
Sbjct: 627 DDYARRNMYD--QDMLSSADDALRPRYMECLDRM 658
>02_05_1165 +
34630369-34630431,34630771-34630855,34631212-34631332,
34631588-34631831,34631922-34632026,34632110-34632154,
34632243-34632395,34632481-34632762,34632844-34632980,
34633065-34633152
Length = 440
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 97 NRFITRNCFVNSNQADDFTRQTVQDVRQAVLSSASLRPRIQEAL 228
N F+ +N +N N DF+ T R A L SAS+ + AL
Sbjct: 105 NLFMWKNTRINHNFIFDFSSNTALTHRDAFLMSASIMCTVVAAL 148
>02_05_0903 -
32630190-32630461,32631084-32631470,32631727-32631817,
32632320-32632492,32632671-32632842
Length = 364
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 390 ASASAPTRQRAPVVVTADGHXLQNNLWDRLSS 485
A A+AP R+ A D H L + WD SS
Sbjct: 92 AEAAAPPRRPAAAAANEDLHCLLQSFWDSSSS 123
>10_08_0824 +
20821724-20822137,20822457-20822543,20822729-20822829,
20822917-20822967,20823616-20823790,20823878-20824192,
20824504-20824707,20824799-20825314,20825400-20825609,
20826092-20826280,20827254-20827405,20827685-20827837,
20827925-20828006,20828086-20828475
Length = 1012
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 498 RTAFAASSYCRFPDSFIPL 554
RT F A +Y FPDS++PL
Sbjct: 259 RTHFNACTYVVFPDSYLPL 277
>06_03_1201 +
28359286-28359452,28360018-28360075,28361060-28361152,
28362100-28362421,28362698-28362982,28363431-28363459
Length = 317
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 535 GNRQYELAANAVLPLHLLERRSQRLFCNXCPSAVTTTGALCRVGALALAAWKN 377
G + +LA+ LPL + R C C + G + R+G L LAA KN
Sbjct: 89 GGGEEQLASQGGLPLPRVAGR-----CPNCENRCGAGGPISRLGKLVLAACKN 136
>02_05_1335 -
35770403-35770543,35770630-35770755,35770859-35770942,
35771444-35771656,35771759-35771977
Length = 260
Score = 27.5 bits (58), Expect = 8.1
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Frame = +1
Query: 100 RFITRNCFVNSNQADDFTRQTVQDVRQAVLSSASLRPRIQEALERINFRFHRTCSFSNII 279
R + + FV R+ Q ++ +++A LR I+E ++ + + +
Sbjct: 49 RRLQDHVFVLEEDLRAAARRIEQLKAESTMNAAGLRRCIEEKETMVSAYNDLSSHSTKLE 108
Query: 280 RDCYVNEAETLLMYRGCDE-----SESRATMSVTASTCSSTQQVPAHQRDRE 420
R+C + E + CD+ E RA ++ + + T QV A +D+E
Sbjct: 109 RECTLYERDLERAMESCDDLAKENDEMRARLNDHTTLSALTTQVEALHKDKE 160
>01_01_0459 +
3400288-3400729,3400760-3400806,3401055-3401141,
3401230-3401561,3401648-3401807,3402155-3402223,
3403165-3403263
Length = 411
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = -2
Query: 456 ATDVRLL*RRPELSVALVRWHLLRGRTGRGCDAHGGPTLGLV 331
ATD R RR L +A L R R GR C G GL+
Sbjct: 51 ATDARPPPRRRRLGLATASARLRRRRAGRACRLGAGWLAGLL 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,875,438
Number of Sequences: 37544
Number of extensions: 331496
Number of successful extensions: 1090
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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