Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29g07
         (577 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY946008-1|AAY23347.1| 1841|Homo sapiens peripheral clock protei...    32   1.3  
AK127189-1|BAC86878.1| 1028|Homo sapiens protein ( Homo sapiens ...    30   6.7  
BC014609-1|AAH14609.1|  214|Homo sapiens chromosome 19 open read...    29   8.9  
BC012365-1|AAH12365.2|  531|Homo sapiens Unknown (protein for MG...    29   8.9  
AY753639-1|AAX09280.1|  214|Homo sapiens c113 sperm protein prot...    29   8.9  

>AY946008-1|AAY23347.1| 1841|Homo sapiens peripheral clock protein 2
           protein.
          Length = 1841

 Score = 32.3 bits (70), Expect = 1.3
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = +1

Query: 322 RGCDESESRATMSVTASTCSSTQQVPAHQ-RDRELRSSSQQTD----IXCRIISGIASPV 486
           R    S S  ++S T S  SS      H  ++   R SSQ  D    I   + SG ASP 
Sbjct: 261 RNSYSSSSELSLSSTCSEYSSGSSYTWHDGKNLRKRQSSQNWDKRLSIDSSLPSGFASPT 320

Query: 487 NEVEEQRLLRARIADSL 537
           NE+   R+  + I + L
Sbjct: 321 NELPPTRIKESHILEGL 337


>AK127189-1|BAC86878.1| 1028|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45254 fis, clone BRHIP2013958. ).
          Length = 1028

 Score = 29.9 bits (64), Expect = 6.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 358 SVTASTCSSTQQVPAHQRDRELRSSSQQTDIXCRIISGI 474
           S   S CS+    PA   D ++RS  +Q  +  R+I GI
Sbjct: 107 SAAMSACSTISAQPASSMDTQMRSPKKQERVNKRVIWGI 145


>BC014609-1|AAH14609.1|  214|Homo sapiens chromosome 19 open reading
           frame 36 protein.
          Length = 214

 Score = 29.5 bits (63), Expect = 8.9
 Identities = 14/64 (21%), Positives = 30/64 (46%)
 Frame = -2

Query: 294 HVTISNYIGKAASSMKSKIDSF*SFLNSWSERGR*EDCLSHILHCLSCEIIRLVGIYEAI 115
           HV    Y  ++++  KS +    +++N+W ++      +S  L CL    +  + + +A 
Sbjct: 149 HVACFGYNCESSAQWKSAVQGLLNYINNWHKQDTSMSLVSPALRCLEPPHLANLTLEDAA 208

Query: 114 SCYK 103
            C K
Sbjct: 209 ECLK 212


>BC012365-1|AAH12365.2|  531|Homo sapiens Unknown (protein for
           MGC:20521) protein.
          Length = 531

 Score = 29.5 bits (63), Expect = 8.9
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 299 RLKPC*CTGAATSPRVGPP*A--SQPRPVLPRSKCQRTNATESSGRRHSRRTSVAE 460
           R +P     A  SP V P     S+PRP++P    QR  A +  G+  +R +S+ +
Sbjct: 233 RFRPNQQQQAGKSPPVCPECGQTSRPRPIVPDPPAQRLYACDECGKAFTRTSSLLQ 288


>AY753639-1|AAX09280.1|  214|Homo sapiens c113 sperm protein
           protein.
          Length = 214

 Score = 29.5 bits (63), Expect = 8.9
 Identities = 14/64 (21%), Positives = 30/64 (46%)
 Frame = -2

Query: 294 HVTISNYIGKAASSMKSKIDSF*SFLNSWSERGR*EDCLSHILHCLSCEIIRLVGIYEAI 115
           HV    Y  ++++  KS +    +++N+W ++      +S  L CL    +  + + +A 
Sbjct: 149 HVACFGYNCESSAQWKSAVQGLLNYINNWHKQDTSMSLVSPALRCLEPPHLANLTLEDAA 208

Query: 114 SCYK 103
            C K
Sbjct: 209 ECLK 212


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,405,212
Number of Sequences: 237096
Number of extensions: 1703241
Number of successful extensions: 4307
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4307
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)