Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29g07
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein...    29   2.4  
Z81529-5|CAB04296.1|  288|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U29537-8|ABS83848.1|  258|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z81107-11|CAJ90502.1|  476|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z81107-10|CAB03233.1|  646|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z73103-12|CAJ90500.1|  476|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z73103-11|CAA97431.1|  646|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z46793-4|CAA86773.1|  889|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z34800-5|CAA84325.1|  889|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U56963-7|AAQ01523.1|  526|Caenorhabditis elegans Amino acid tran...    27   9.5  
AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical ...    27   9.5  
AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine re...    27   9.5  
AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine re...    27   9.5  
AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.    27   9.5  
AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.    27   9.5  

>Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical
           protein C44H4.3 protein.
          Length = 680

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 295 NEAETLLMYRGCDESESRATMSVTASTCSSTQQVPAHQRDRE 420
           +EAE +    G +ESE   T   T +T   + +VPA  R+R+
Sbjct: 598 DEAEYISDDGGAEESEEAETTVATTTTTEPSVKVPARIRERQ 639


>AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein
           protein.
          Length = 680

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 295 NEAETLLMYRGCDESESRATMSVTASTCSSTQQVPAHQRDRE 420
           +EAE +    G +ESE   T   T +T   + +VPA  R+R+
Sbjct: 598 DEAEYISDDGGAEESEEAETTVATTTTTEPSVKVPARIRERQ 639


>Z81529-5|CAB04296.1|  288|Caenorhabditis elegans Hypothetical
           protein F35E8.7 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 445 PSAVTTTGALCRVGALALAAWKNRSRL*RSWWPDSRTRRSPGTSAGF 305
           P+AVTTT A+      A AA    +    S+ PD RTR      +GF
Sbjct: 221 PAAVTTTAAVTTTTVAAAAATTTAAAC-TSYIPDGRTRCGEYARSGF 266


>U29537-8|ABS83848.1|  258|Caenorhabditis elegans Hypothetical
           protein F28B12.1b protein.
          Length = 258

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +1

Query: 355 MSVTASTCSSTQQVPAHQRDRELRSSSQQTDIXCRIISGIASPVNEVEEQRLLRARIADS 534
           +S+T    S+    P+  R   L S+S +T    RI+       N++EE R+   RI DS
Sbjct: 11  ISITFHRMSAPSPSPSISR---LNSNSDET---FRIVVNYLVTSNKLEETRVKYTRIIDS 64

Query: 535 LTVSSPCI 558
           L +   C+
Sbjct: 65  LVLQMDCL 72


>Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical
           protein ZK1037.9 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 189 EDCLSHILHCLSCEIIRLVGIYEAISCYKSVHFSKPSILINLFIFTVILK 40
           +D   ++   + CEI   +        Y + H S   +LINLF FT++ +
Sbjct: 10  DDKTRNLTEPVLCEIANSLSTVTKALTYITPHISFLCVLINLFHFTILTR 59


>Z81107-11|CAJ90502.1|  476|Caenorhabditis elegans Hypothetical
           protein R07H5.2b protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 324 PVHQQGFSLIHVTISNYIGKAASSMKSKIDS 232
           PV Q GF + +  + N +G   SS KSK D+
Sbjct: 424 PVVQDGFGIGYNVVPNKLGAVISSNKSKRDA 454


>Z81107-10|CAB03233.1|  646|Caenorhabditis elegans Hypothetical
           protein R07H5.2a protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 324 PVHQQGFSLIHVTISNYIGKAASSMKSKIDS 232
           PV Q GF + +  + N +G   SS KSK D+
Sbjct: 594 PVVQDGFGIGYNVVPNKLGAVISSNKSKRDA 624


>Z73103-12|CAJ90500.1|  476|Caenorhabditis elegans Hypothetical
           protein R07H5.2b protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 324 PVHQQGFSLIHVTISNYIGKAASSMKSKIDS 232
           PV Q GF + +  + N +G   SS KSK D+
Sbjct: 424 PVVQDGFGIGYNVVPNKLGAVISSNKSKRDA 454


>Z73103-11|CAA97431.1|  646|Caenorhabditis elegans Hypothetical
           protein R07H5.2a protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 324 PVHQQGFSLIHVTISNYIGKAASSMKSKIDS 232
           PV Q GF + +  + N +G   SS KSK D+
Sbjct: 594 PVVQDGFGIGYNVVPNKLGAVISSNKSKRDA 624


>Z46793-4|CAA86773.1|  889|Caenorhabditis elegans Hypothetical
           protein F45H7.6 protein.
          Length = 889

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 328 CDESESRATMSVTASTCSSTQQVPAHQRDRELRSSSQQ 441
           C E    AT    A TC +  Q+P++   ++L+S  QQ
Sbjct: 841 CIEKWGDATSFPRAHTCFNRLQLPSYNTKQQLKSKLQQ 878


>Z34800-5|CAA84325.1|  889|Caenorhabditis elegans Hypothetical
           protein F45H7.6 protein.
          Length = 889

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 328 CDESESRATMSVTASTCSSTQQVPAHQRDRELRSSSQQ 441
           C E    AT    A TC +  Q+P++   ++L+S  QQ
Sbjct: 841 CIEKWGDATSFPRAHTCFNRLQLPSYNTKQQLKSKLQQ 878


>U56963-7|AAQ01523.1|  526|Caenorhabditis elegans Amino acid
           transporter protein 4 protein.
          Length = 526

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 354 GGPTLGLVAAPVHQQG-FSLIHVTISNYIG 268
           G PT+G +AA  HQ G +S +   I+N IG
Sbjct: 6   GVPTIGDIAASRHQMGLWSCMSYVIANIIG 35


>AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical
           protein H30A04.1b protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = -2

Query: 153 CEIIRLVGIYEAISCYKSV-----HFSKPS 79
           C ++ + GIY A+ C +SV     HF+ PS
Sbjct: 5   CRVLLIFGIYVAVCCAQSVEDDVFHFTNPS 34


>AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical
           protein H30A04.1a protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = -2

Query: 153 CEIIRLVGIYEAISCYKSV-----HFSKPS 79
           C ++ + GIY A+ C +SV     HF+ PS
Sbjct: 5   CRVLLIFGIYVAVCCAQSVEDDVFHFTNPS 34


>AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein142 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 108 YKSVHFSKPSILINLFIFTVILK 40
           Y   HFS  SI INLF F ++++
Sbjct: 38  YFEPHFSAASIFINLFHFLILIR 60


>AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein141 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 108 YKSVHFSKPSILINLFIFTVILK 40
           Y   HFS  SI INLF F ++++
Sbjct: 38  YFEPHFSAASIFINLFHFLILIR 60


>AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = -2

Query: 153 CEIIRLVGIYEAISCYKSV-----HFSKPS 79
           C ++ + GIY A+ C +SV     HF+ PS
Sbjct: 5   CRVLLIFGIYVAVCCAQSVEDDVFHFTNPS 34


>AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.
          Length = 808

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = -2

Query: 153 CEIIRLVGIYEAISCYKSV-----HFSKPS 79
           C ++ + GIY A+ C +SV     HF+ PS
Sbjct: 5   CRVLLIFGIYVAVCCAQSVEDDVFHFTNPS 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,544,576
Number of Sequences: 27780
Number of extensions: 275528
Number of successful extensions: 874
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)