Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29g05
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0665 - 4855870-4855956,4856407-4856482,4856794-4856910,485...    30   1.3  
07_03_1532 - 27519701-27520831                                         28   5.3  
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194...    28   7.0  

>06_01_0665 -
           4855870-4855956,4856407-4856482,4856794-4856910,
           4857062-4857127,4858578-4858670,4858788-4858909,
           4859810-4860365,4860485-4860628,4860698-4860831,
           4861003-4861100,4861172-4861353,4861464-4861540,
           4862083-4862305,4862580-4862745,4862836-4863040,
           4864981-4865199
          Length = 854

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 324 GACPACRVGILEDDFTCLGILCAIL 398
           G CP CRV +L  DF C    CA+L
Sbjct: 40  GCCP-CRVVVLPPDFCCADAWCALL 63


>07_03_1532 - 27519701-27520831
          Length = 376

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -2

Query: 257 WRRSTIWTIARRWWGKRCTWRIRCLWVCMRLKPWRDCRRIRRGLLGHSWFLHYTE 93
           W +S+   +AR  +   CT +    W     K W     ++   + HSWF+ + E
Sbjct: 129 WDKSSNPYVARTIYSTSCTNKRYNYWDYQ--KAWEKVLLVQNSQMKHSWFIRFKE 181


>12_02_0959 +
           24818310-24818369,24818689-24819136,24819265-24819482,
           24819651-24819929
          Length = 334

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 95  QYNGETNCDRATPAVFCGSPSRASTA 172
           QY    + D +TP+V  GSP +AST+
Sbjct: 133 QYLSSDSEDTSTPSVLIGSPHKASTS 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,424,200
Number of Sequences: 37544
Number of extensions: 328700
Number of successful extensions: 1063
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)