Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29g04
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   2.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   4.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   4.9  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   6.5  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   6.5  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   6.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   8.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   8.6  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +3

Query: 177 GCH-GPRARRASVADPQRRPRQGATSLSQRFYQ 272
           GC+ GP        DP+R P Q   S S  F Q
Sbjct: 406 GCNAGPAKYYLKSRDPERTPYQWDNSTSAGFSQ 438


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 127 PLFPIFGPASVHCFRSLANSL 65
           P  P   P+    FRSL NSL
Sbjct: 271 PYSPDLAPSDYFLFRSLQNSL 291


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 79  RNENNELTPDQISEIADL 132
           RN+NN + PD I+ + +L
Sbjct: 260 RNDNNIVRPDFINMLMEL 277


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 208 EARRARGPWQPRSTETSCPLRSTLQLG 128
           E RR+  P +P   + +CPL    +LG
Sbjct: 331 EERRSE-PVEPPRRKNNCPLHCKPELG 356


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 223 NVDRDKVRPVCLKDFTSALQRVKPSVSQDDLGQYIKWN 336
           NVD   V P   +D   A     PS+S +D  +   WN
Sbjct: 34  NVDTVLVLPSIERDQMMAATFDFPSLSFEDSDEGSNWN 71


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 223 NVDRDKVRPVCLKDFTSALQRVKPSVSQDDLGQYIKWN 336
           NVD   V P   +D   A     PS+S +D  +   WN
Sbjct: 34  NVDTVLVLPSIERDQMMAATFDFPSLSFEDSDEGSNWN 71


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 223 NVDRDKVRPVCLKDFTSALQRVKPSVSQDDLGQYIKWN 336
           NVD   V P   +D   A     PS+S +D  +   WN
Sbjct: 34  NVDTVLVLPSIERDQMMAATFDFPSLSFEDSDEGSNWN 71


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 58  QIIMNLLRNENNELTPD 108
           +++ NLLR  +N + PD
Sbjct: 8   ELLDNLLRGYDNSVRPD 24


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 52  RKQIIMNLLRNENNELTP 105
           R++II    +N+N  LTP
Sbjct: 460 REKIIEEKRKNKNKNLTP 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,994
Number of Sequences: 438
Number of extensions: 1864
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)