Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29g03
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286... 70 2e-12
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 43 2e-04
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 42 7e-04
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 37 0.015
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683... 32 0.55
07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987... 29 2.9
04_04_0268 - 24050721-24050971,24051112-24051276,24051479-240517... 28 6.7
03_06_0040 + 31240164-31241102,31241280-31241897 28 6.7
>04_04_0631 -
26728144-26728228,26728321-26728398,26728584-26728650,
26728748-26728824,26729961-26730012,26730248-26730294,
26730457-26730527
Length = 158
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Frame = +2
Query: 254 HILTIPKRHIEDVKSL--TSADKELLNRMMSISRELLSKNNLSIEDARFGYHWPPFRSVK 427
H L IP HI V +L T+ D +L++ M+++ R+LL+++ + E+ RFG+H PPF SV
Sbjct: 58 HYLVIPIEHIPTVNNLQRTTEDHQLVSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVD 117
Query: 428 HLHLHTIA 451
HLHLH +A
Sbjct: 118 HLHLHCLA 125
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +2
Query: 152 CIFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKS 298
C+FC I + LYEDD D KP S H L IPKRH +++
Sbjct: 73 CVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQA 121
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 41.5 bits (93), Expect = 7e-04
Identities = 24/54 (44%), Positives = 31/54 (57%)
Frame = +2
Query: 155 IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADK 316
IF I K + ++YED++V FRDI P + H+L IPK I D LT DK
Sbjct: 46 IFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPK--IRD--GLTGLDK 95
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +2
Query: 155 IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADK---ELL 325
+F I K + ++++D++V FRDI P + HI+ IPK + + L+ A++ E+L
Sbjct: 195 VFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVK-DGLTGLSKAEERHVEIL 253
Query: 326 NRMMSISRELLSKNNL 373
++ +++ + + L
Sbjct: 254 GYLLYVAKVVAKQEGL 269
>05_06_0060 -
25266735-25267210,25267323-25267569,25267650-25268345,
25268457-25268709,25268786-25269261,25270760-25270909
Length = 765
Score = 31.9 bits (69), Expect = 0.55
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +2
Query: 335 MSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHLHTIAPESEMGFIGRVIFKKNSYWFV 514
M +SR+ LS NN+S +D FG F+ V + + +G+ ++ + YWF
Sbjct: 527 MPVSRDTLSPNNVSFDDCHFGTQC--FQQVTKVKSRIVLKILRLGY-NVLLSDVDVYWFH 583
Query: 515 SP 520
+P
Sbjct: 584 NP 585
>07_03_1583 -
27898375-27898436,27898455-27898539,27898621-27898768,
27899009-27899028,27899135-27899236,27899743-27899812,
27899956-27900012,27902324-27902484,27902742-27902761,
27902997-27903069,27903077-27903169,27903456-27903496,
27903597-27903858
Length = 397
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 107 TRTTGFLALKLTCFFFYYH*LFTDW 33
T+ GFLA +TC F + + + TDW
Sbjct: 113 TQEAGFLASAVTCIFCWIYMIVTDW 137
>04_04_0268 -
24050721-24050971,24051112-24051276,24051479-24051749,
24052344-24052517
Length = 286
Score = 28.3 bits (60), Expect = 6.7
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +2
Query: 281 IEDVKSLTSADKELLNRMMSISRELLSKNNLS--IEDARFGYHWPPFRSVKHLHLHTIAP 454
IE + L +A E + R S + +LL +LS + D R G WP +H+ AP
Sbjct: 170 IEHIPELVAASTENVQR--SAAAQLLKDGSLSFHVADGRLG--WPDDAPYDAIHVGAAAP 225
Query: 455 ESEMGFI------GRVIFKKNSYW 508
E + GR++ SY+
Sbjct: 226 EIPQPLVDQLKTGGRMVIPVGSYF 249
>03_06_0040 + 31240164-31241102,31241280-31241897
Length = 518
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 302 TSADKELLNRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHL 439
T D NR S+ L + N S+ A +G HW R + +HL
Sbjct: 90 TDNDVCFANRPRFPSQMLATFNGTSLGSANYGPHWRNLRRIATVHL 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,357,388
Number of Sequences: 37544
Number of extensions: 326385
Number of successful extensions: 534
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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