Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29g01
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27079-2|CAA81589.1|  205|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase prot...    27   8.1  
AF039052-7|AAO91672.2|  462|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF039052-6|AAF98635.2|  534|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z27079-2|CAA81589.1|  205|Caenorhabditis elegans Hypothetical
           protein T05G5.2 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 517 PPVAPLAA-TRRIIPSYLVPIPTYRC 591
           PP AP A  +  I+ + LVP+P+Y+C
Sbjct: 179 PPPAPTAPQSHLIVNNQLVPMPSYQC 204


>U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase protein
           4 protein.
          Length = 751

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 493 RRCCSTTCPPVAPLAATRRIIPSYLVP 573
           RR C TT   VAP+A  R+  PS   P
Sbjct: 652 RRMCGTTAGSVAPVAQVRQTNPSRQPP 678


>AF039052-7|AAO91672.2|  462|Caenorhabditis elegans Hypothetical
           protein T22D1.3b protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -2

Query: 452 LGTSA----GLLGARLQHLGDVTPGRSGSQLXKYRGFEQLPVLPDHLTTE 315
           LG SA    GLL A  +  G+   G  G ++ KYRG   L  +  H +++
Sbjct: 397 LGASAVMMGGLLAATTEAPGEYFWGPGGVRVKKYRGMGSLDAMEAHASSQ 446


>AF039052-6|AAF98635.2|  534|Caenorhabditis elegans Hypothetical
           protein T22D1.3a protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -2

Query: 452 LGTSA----GLLGARLQHLGDVTPGRSGSQLXKYRGFEQLPVLPDHLTTE 315
           LG SA    GLL A  +  G+   G  G ++ KYRG   L  +  H +++
Sbjct: 397 LGASAVMMGGLLAATTEAPGEYFWGPGGVRVKKYRGMGSLDAMEAHASSQ 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,067,763
Number of Sequences: 27780
Number of extensions: 211646
Number of successful extensions: 723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)