Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29f21
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0415 - 8263459-8263611,8263788-8263919,8264841-8264936,826...    30   2.0  
07_03_0488 + 18674465-18674873,18675343-18675520,18675932-186760...    29   2.6  
03_01_0165 + 1335444-1335747,1335890-1336167,1337440-1337496           29   4.5  
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964...    28   7.9  

>03_02_0415 -
           8263459-8263611,8263788-8263919,8264841-8264936,
           8265021-8265137,8265352-8265435,8265517-8265577,
           8266217-8266266,8266544-8266633,8267539-8267757,
           8269207-8269262,8269469-8269546,8269707-8269811,
           8269925-8270069,8270310-8270388,8270470-8270537,
           8271550-8271626,8272676-8272712,8273107-8273232,
           8273770-8273805
          Length = 602

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 27/91 (29%), Positives = 43/91 (47%)
 Frame = +2

Query: 392 KRTKVRRQRSIYQVHYNIEKRNDELMTKPLALQKGLEIQAYDLQVAGHRKTEDTKYSGLL 571
           K TK  ++ SI Q   ++E+R  EL  + LAL+K  E++    Q+   R    +  SGL+
Sbjct: 405 KITKEAKENSILQA--SLERRKVELHKRRLALEK--EVENLRDQLQKERNLRVSLESGLM 460

Query: 572 QCSNGTILKPIIKDSQRREVDFYERMWASSD 664
               G    P   D+ + + D  E   A +D
Sbjct: 461 NLRRGQASFPSTIDN-KTKADLEEVATAEAD 490


>07_03_0488 +
           18674465-18674873,18675343-18675520,18675932-18676072,
           18677736-18677856,18678570-18678704,18679380-18679637
          Length = 413

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 473 KPLALQKGLEIQAYDLQVAGHRKTEDTKYSGLLQCSNGTILKPI-IKDSQRREVDFYERM 649
           +P    +G     Y+L +A HR     +Y       NG  L+ +  K   R +VD  ++ 
Sbjct: 166 RPAGADRGFTFLRYNLTLAYHRTNLLVRYGRWSASPNGGPLESLGYKQGYRVDVDIPDQT 225

Query: 650 WASS 661
           WA +
Sbjct: 226 WAEA 229


>03_01_0165 + 1335444-1335747,1335890-1336167,1337440-1337496
          Length = 212

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 326 WR-CKTHFFFNM*NDDLYLKCKPPLIPFVINIL*YPQSYGNF 204
           WR  KT FF       L L C PPL+  V+++L  P    NF
Sbjct: 22  WRWAKTVFFLVSMLASLLLVCAPPLLIVVLDLLLPPALLSNF 63


>01_07_0383 -
           43195095-43195322,43195408-43195638,43196134-43196454,
           43196512-43196589,43196664-43197727,43197813-43198503,
           43198743-43199541,43200010-43200158,43200159-43200286,
           43200389-43200494,43200835-43200843,43201332-43201821,
           43201896-43202554,43203759-43203851,43204044-43204196,
           43205092-43205194,43205376-43205467,43206229-43206306,
           43206987-43207049,43207339-43207512
          Length = 1902

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 252 SFCN*YSIISAKLWKFCHNNCH 187
           S+CN + ++ ++ W F  N C+
Sbjct: 382 SYCNIHKVVFSRFWHFLQNGCY 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,757,301
Number of Sequences: 37544
Number of extensions: 356930
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)