Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29f19
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 137 1e-33
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 3.0
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 4.0
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 7.0
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 25 7.0
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 7.0
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 25 9.3
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 9.3
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc... 25 9.3
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 137 bits (332), Expect = 1e-33
Identities = 68/149 (45%), Positives = 92/149 (61%)
Frame = +3
Query: 192 SHDAYYNYFLNLPFPKNKIFATYVWIDASGINLRSKDRILDKEPCDLEMVPKWSYDGSST 371
S A N + +LP K+ A Y+WID +LRSK LD +P ++ + W++DGSST
Sbjct: 11 SKAAILNKYADLP-QNGKVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGSST 68
Query: 372 GQSDLKDSEITLLPVAVYRDPFRKSPHIIVLCETYSSEGLPTPTNHRVSSAITLSKICDQ 551
GQ+ +S+ L PVA+Y DPFR+ +I+VL Y+++G P NHR + A L K D+
Sbjct: 69 GQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHADK 128
Query: 552 EPWFGIEQEYTMFDRDHWPLGWPKPRGYP 638
E WFGIEQEYTM D P GWPK G+P
Sbjct: 129 ETWFGIEQEYTMLDYYDRPFGWPK-GGFP 156
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 504 NHRVSSAITLSKICDQEPWFGIEQE 578
NHRV+S +T + + +P F IEQ+
Sbjct: 473 NHRVNSNLTANNSLNDKPGFTIEQK 497
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +3
Query: 414 VAVYRDPFRKSPHIIVLCETYSSEGLPTPTNHRVSSAITLSKICDQEP 557
+A+ RD F ++ ++V CET+S++G N+ + + L+ + + +P
Sbjct: 1152 MALQRDAFIRA--LVVKCETFSTQGHKDKDNYFQNYQLLLNWLENSDP 1197
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 409 SSVISESFRSDCPVELPSYDHFGTISKSQGSLSNIR 302
S + +S R+DC LP + FG++ S++R
Sbjct: 1010 SRISMDSMRNDCEAFLPKKEKFGSLRTLHSFESSMR 1045
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 336 MVPKWSYDGSSTGQSDLKDSEITLLPVAVYRDPF 437
M P+ GS T SD+ +TL+ VA+ R PF
Sbjct: 246 MAPERISGGSYTISSDIWSLGLTLMEVALNRFPF 279
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 454 ICGLLRKGSLYTATGSSVISESF 386
IC L + G + TATGSS+ S +
Sbjct: 705 ICSLTQDGQIATATGSSLQSVGY 727
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +3
Query: 195 HDAYYNYFLNLPFPKNKIFATYVWIDASGINLRSKDRILDKEPCDLEMVPKWSYD 359
HD + Y+ FP N I I +L +L+ P ++E V SY+
Sbjct: 360 HDYFLKYYKAAKFPTNNIRTPIYLIWGGSDSLVDIQAMLNALPAEVEHVKVDSYE 414
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 99 FRSIFLSKNLVYKNMKHVYYLSTSSIFGH 185
F F S NL NMK + Y+ +S F H
Sbjct: 865 FARQFKSSNLFCDNMKMLGYIPRASTFAH 893
>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
Nse5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Frame = +3
Query: 234 PKNKI---FATYVWIDASGINLRSKDRILDKE 320
PKNKI W+ G LR DR DKE
Sbjct: 310 PKNKIRQKLHLRAWVSFLGSALRESDRNFDKE 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,460
Number of Sequences: 5004
Number of extensions: 62075
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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