Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29f19
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591...   154   5e-38
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943...   153   1e-37
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642...   152   2e-37
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200...   121   6e-28
02_05_0090 - 25742533-25744557                                         31   0.78 
07_03_1001 - 23224372-23224385,23225451-23227374                       31   1.0  
07_03_1002 - 23229298-23231471,23235866-23237777                       29   3.1  
01_06_1093 + 34471262-34471334,34474526-34476759                       29   3.1  
12_02_0752 + 22784052-22784288,22784531-22784704,22784799-227849...    28   5.5  
03_01_0549 - 4102098-4102198,4102394-4102544,4102629-4102760,410...    28   5.5  
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    28   7.2  

>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
            33659197-33659356,33660032-33660081,33662237-33662290,
            33662630-33662704,33662821-33662949,33663065-33663152,
            33663266-33663372,33663513-33663561,33663657-33663760,
            33663941-33663980,33664409-33664659,33664674-33664686,
            33665846-33666355,33666437-33667657,33667973-33668221,
            33668305-33668531
          Length = 1194

 Score =  154 bits (374), Expect = 5e-38
 Identities = 73/140 (52%), Positives = 96/140 (68%), Gaps = 3/140 (2%)
 Frame = +3

Query: 228  PFPKNKIFATYVWIDASGINLRSKDRILDKEPCDLEMVPKWSYDGSSTGQSDLKDSEITL 407
            PF  +KI A Y+W+  +GI+LRSK R + K   D   +PKW+YDGSSTGQ+  +DSE+ L
Sbjct: 813  PFT-DKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVIL 871

Query: 408  LPVAVYRDPFRKSPHIIVLCETYSSEGLPTPTNHRVSSAITLS--KICDQEPWFGIEQEY 581
             P A+++DPFR   +I+V+C+TY+  G P PTN R  +A   S  K+  Q PWFGIEQEY
Sbjct: 872  YPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQVPWFGIEQEY 931

Query: 582  TMFDRD-HWPLGWPKPRGYP 638
            T+  RD +WPLGWP   GYP
Sbjct: 932  TLLQRDVNWPLGWP-VGGYP 950


>02_05_0661 -
           30693701-30693853,30694037-30694196,30694290-30694381,
           30694469-30694543,30694671-30694799,30694916-30695003,
           30695118-30695224,30695645-30695693,30695802-30695905,
           30696108-30696147,30696838-30696911
          Length = 356

 Score =  153 bits (371), Expect = 1e-37
 Identities = 71/143 (49%), Positives = 97/143 (67%), Gaps = 3/143 (2%)
 Frame = +3

Query: 219 LNLPFPKNKIFATYVWIDASGINLRSKDRILDKEPCDLEMVPKWSYDGSSTGQSDLKDSE 398
           LNL     KI A Y+WI  SG++LRSK R L     D   +PKW+YDGSSTGQ+  +DSE
Sbjct: 10  LNLSDTTEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSE 69

Query: 399 ITLLPVAVYRDPFRKSPHIIVLCETYSSEGLPTPTNHRVSSAITLS--KICDQEPWFGIE 572
           + L P A+++DPFRK  +I+V+C+ Y+  G P PTN R ++A   S  ++  +EPW+GIE
Sbjct: 70  VILYPQAIFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIE 129

Query: 573 QEYTMFDRD-HWPLGWPKPRGYP 638
           QEYT+  +D +WPLGWP   G+P
Sbjct: 130 QEYTLLQKDINWPLGWP-VGGFP 151


>03_02_0210 -
           6425708-6425863,6425955-6426114,6426204-6426295,
           6426490-6426564,6426701-6426829,6427312-6427375,
           6427761-6427867,6428795-6428843,6428955-6429058,
           6429166-6429205,6429492-6429565
          Length = 349

 Score =  152 bits (369), Expect = 2e-37
 Identities = 68/139 (48%), Positives = 96/139 (69%), Gaps = 3/139 (2%)
 Frame = +3

Query: 219 LNLPFPKNKIFATYVWIDASGINLRSKDRILDKEPCDLEMVPKWSYDGSSTGQSDLKDSE 398
           LNL    +KI A Y+W+  SGI+LRSK R +     D+  +PKW+YDGSSTGQ+  +DSE
Sbjct: 10  LNLSDCSDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSE 69

Query: 399 ITLLPVAVYRDPFRKSPHIIVLCETYSSEGLPTPTNHRVSSAITLS--KICDQEPWFGIE 572
           + L P A+++DPFR+  +I+V+C+ Y+ +G P PTN R S+A   S   +  + PW+GIE
Sbjct: 70  VILYPQAIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIE 129

Query: 573 QEYTMFDRD-HWPLGWPKP 626
           QEYT+  +D +WPLGWP P
Sbjct: 130 QEYTLLQKDVNWPLGWPGP 148


>03_05_0899 -
           28619081-28619208,28619309-28619369,28619936-28620095,
           28620200-28620237,28620341-28620394,28620562-28620636,
           28620744-28620872,28621172-28621259,28621340-28621446,
           28621547-28621595,28621683-28621786,28622019-28622133,
           28622517-28622596
          Length = 395

 Score =  121 bits (291), Expect = 6e-28
 Identities = 56/122 (45%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
 Frame = +3

Query: 282 INLRSKDRILDKEPCDLEMVPKWSYDGSSTGQSDLKDSEITLLPVAVYRDPFRKSPHIIV 461
           ++L+  +  L     D   +PKW++DGSSTGQ+   DSE+ L P A++RDPFRK  +I+V
Sbjct: 58  LHLKEVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILV 117

Query: 462 LCETYSSEGLPTPTNHRVSSAITLS--KICDQEPWFGIEQEYTMFDRD-HWPLGWPKPRG 632
           +C+ Y+  G P PTN+R ++A   S   +  +EPW+GIEQEYT+  +  +WPLGWP   G
Sbjct: 118 MCDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHINWPLGWPL-GG 176

Query: 633 YP 638
           YP
Sbjct: 177 YP 178


>02_05_0090 - 25742533-25744557
          Length = 674

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 489 LPTPTNHRVSSAITLSKICDQEPWFGIEQEYTMFDRDHWPLGW 617
           LP PT   +S+A+ LS + + E + G      +    H+ L W
Sbjct: 227 LPKPTTPLLSAAVNLSAVIEDEAYVGFSSSTGVVASRHYVLAW 269


>07_03_1001 - 23224372-23224385,23225451-23227374
          Length = 645

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 471 TYSSEGLPTPTNHRVSSAITLSKICDQEPWFGIEQEYTMFDRDHWPLGW 617
           T S   +P P    +S AI LS +  +E + G      + +  H+ LGW
Sbjct: 232 TLSPVQVPKPKKPLLSQAIDLSTVMAEEMYVGFSSATGVVNTHHYVLGW 280


>07_03_1002 - 23229298-23231471,23235866-23237777
          Length = 1361

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 471 TYSSEGLPTPTNHRVSSAITLSKICDQEPWFGIEQEYTMFDRDHWPLGW 617
           T S   +P P    +S AI LS +  +E + G      +    H+ LGW
Sbjct: 228 TLSPVQVPKPKKPLLSQAIDLSTVMAEEMYVGFSSATGVVFTHHYVLGW 276


>01_06_1093 + 34471262-34471334,34474526-34476759
          Length = 768

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 267 IDASGINLRSKDRILDKEPCDLEMVPKWSYDGSSTGQSDLKDSEITLLPVAV 422
           +D + +NL  +D  L +  C  E   KW+Y     G+  +  S  T  P+ +
Sbjct: 631 VDDTKVNLDGEDDYLFRTVCPGEKTLKWNYGPELIGEHSINISADTFEPLPI 682


>12_02_0752 +
           22784052-22784288,22784531-22784704,22784799-22784930,
           22785062-22785439
          Length = 306

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 279 GINLRSKDRILDKEPCDLEMVPKWSYDGSSTGQSDLKDSEITLLP 413
           G+  R+  R LD+E  + E+ P+   D  S    D+  S IT+LP
Sbjct: 2   GVVTRAMKRRLDEESSNPELAPRGGEDLISRLPDDIFTSIITILP 46


>03_01_0549 -
           4102098-4102198,4102394-4102544,4102629-4102760,
           4102988-4103162,4103494-4103945,4104042-4104121,
           4104342-4104408,4104709-4104814,4104924-4105033,
           4105133-4105201,4105661-4105771,4106263-4106427,
           4106639-4106725,4106974-4107027,4107101-4107240,
           4107820-4107897,4108066-4108720
          Length = 910

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 327 DLEMVPKWSYDGSSTGQSDLKDSEITLLPVAVYRDPFRKSPH 452
           D  M P  S  G +TG+S+L+ +E+ LL   +   P   SPH
Sbjct: 869 DFAMTPSLSEYGKTTGRSELQ-AELNLLADRIKFGPVCISPH 909


>05_04_0122 +
           18198594-18202269,18202551-18202591,18203273-18203281,
           18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 216 FLNLPFPKNKIFATYVWIDASGINLRSKDR 305
           FLN P P+++   TY ++D   +  R K+R
Sbjct: 142 FLNCPMPEDERMQTYSYVDEQEVIGRDKER 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,139,431
Number of Sequences: 37544
Number of extensions: 357062
Number of successful extensions: 867
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)