Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29f18
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0916 - 28762214-28762414,28763144-28763242,28763573-287639...    32   0.43 
11_01_0327 - 2446949-2446999,2447060-2447299,2447542-2447813,244...    29   2.3  
01_01_0610 + 4533141-4533310,4534889-4535075,4535232-4535323,453...    29   4.0  
04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31...    28   7.0  
12_02_0851 + 23668618-23670639                                         27   9.2  
12_01_0052 + 433203-433292,433409-433815,434435-434447,437081-43...    27   9.2  
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042...    27   9.2  

>03_05_0916 -
           28762214-28762414,28763144-28763242,28763573-28763998,
           28764259-28764501,28764706-28764927,28765392-28765721,
           28767380-28767800,28768292-28768404,28769224-28769367,
           28769439-28769570,28769802-28770013,28770983-28771505
          Length = 1021

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +2

Query: 131 ETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQ- 307
           E+   V+  + S+ I + F   N    L  +Y     PNL+S   + MLS  +  +    
Sbjct: 637 ESSLYVLERNPSDTI-ELFLSENVPADLVNSYLKQHAPNLQSTYLELMLSMSVSGINPNL 695

Query: 308 SHEKDMTYSPSILTWNK 358
            +E    Y   +L W+K
Sbjct: 696 QNELVQLYLSEVLDWHK 712


>11_01_0327 -
           2446949-2446999,2447060-2447299,2447542-2447813,
           2447917-2447956,2448057-2448134,2448212-2448271,
           2448434-2448493,2449620-2449766,2449921-2450018,
           2450455-2450582,2451275-2451321
          Length = 406

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/103 (19%), Positives = 38/103 (36%)
 Frame = +2

Query: 221 NYTNHRKPNLKSNVFDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKASIPTPTLELKQKW 400
           NY    +  L   V     + +  +     H  D T   +  T    + P PTL++   W
Sbjct: 23  NYFGELEEALMQQVATLRRTQQTATTTSTLHHGDTTPFSTTATAAATARPPPTLDIFPSW 82

Query: 401 PVIEFLANSGRSENDSQQNNDSQGETRRVGNTFVENSENKVLG 529
           P +  L       N +    DS+  ++   N    + ++ ++G
Sbjct: 83  P-MRSLHTPKEGSNVTADTTDSESSSKNNSNQNASSDQHVLVG 124


>01_01_0610 +
           4533141-4533310,4534889-4535075,4535232-4535323,
           4536203-4536308,4536441-4536649,4537049-4537091,
           4537413-4537645,4537762-4538233
          Length = 503

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 290 LSMKQQSHEKDMT-YSPSILTWNKASIPTPTLELKQKWPVIEFLANSGRSENDSQQNNDS 466
           ++M   S E DM  Y   +++    S+P  + E+ + W   E+  +    E+DS   +DS
Sbjct: 432 IAMAGSSAEVDMVHYRDFLMSSVPVSLPGNSKEVSRFWGPQEYSDDEDEDEDDSNDEDDS 491

Query: 467 QGE 475
             E
Sbjct: 492 DEE 494


>04_01_0021 +
           311914-312399,314218-314310,314391-314672,314754-314826,
           315273-315405,315476-315629,315763-315843,316174-316296,
           316629-316787,316862-316996,317159-317254,317416-317910,
           318651-318722,319496-319537
          Length = 807

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +2

Query: 404 VIEFLANSGRSENDSQQNNDSQGETRRVGNTFVENSENKV 523
           VI+   NSG + + S Q ND+ GE++++G+   ++S + +
Sbjct: 641 VIDSSKNSGENLDSSMQKNDN-GESQQLGDAPADSSSSAI 679


>12_02_0851 + 23668618-23670639
          Length = 673

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 476 TRRVGNTFVENSENKVLGLRSLVHESL 556
           T+R+ + F E  + ++ G  SLVH+SL
Sbjct: 330 TQRLAHCFAEGLQARIAGTGSLVHQSL 356


>12_01_0052 +
           433203-433292,433409-433815,434435-434447,437081-437473
          Length = 300

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 317 KDMTYSPSILTWNKASIPTPTLELKQKWPVIEFLANSGR 433
           K +  S SI+T N    P PTLE+K+   +I  L N GR
Sbjct: 37  KRLCKSQSIMTVN-GQFPGPTLEIKEGDSLIINLINRGR 74


>11_06_0061 -
           19702893-19703869,19703960-19704098,19704166-19704287,
           19704362-19704416,19704508-19704624,19704718-19705413,
           19706358-19706393,19707190-19708236
          Length = 1062

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 176 PDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQSHEKD 322
           P F    N  R    N     + NL S++FD+ L+  + S+ Q +H +D
Sbjct: 728 PGFESVVNGKRSRDWNTDGFSEVNLNSSLFDEELTATINSICQDNHNRD 776


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,277,650
Number of Sequences: 37544
Number of extensions: 290372
Number of successful extensions: 759
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)