Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29f17
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    27   1.5  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   1.9  

>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 263 SRKPVQGTHIALASDMVPKEPTKTQPKASRKP*CEKLSDIGYYYNCINK 117
           S KP     I+  SD + KE   +     +KP C  +++   Y   INK
Sbjct: 547 SLKPHTSLSISFPSDFLKKEDGLSLNNDFKKPACNNVTNSDEYEQLINK 595


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 197 KTQPKASRKP*CEKLSDIGYYYNCINKRN 111
           K  P+A  KP  E L+ +G+YYN I++ N
Sbjct: 32  KKWPRA--KPTPETLATVGFYYNPISESN 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,662,055
Number of Sequences: 5004
Number of extensions: 32823
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)