Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29f17
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0537 + 4029790-4029827,4030048-4030171,4030491-4030754,403...    28   2.4  
03_01_0081 + 645214-645228,645791-645856,645973-646142,646265-64...    27   5.6  
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    26   9.9  

>03_01_0537 +
           4029790-4029827,4030048-4030171,4030491-4030754,
           4030847-4030978,4031068-4031184,4031687-4031963,
           4037100-4037137
          Length = 329

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 395 KSKMHLLKKTYKPI*MEQITETIYMHYHNN 306
           K  + LL+KT + +  +QI E  Y+H H N
Sbjct: 134 KIVIELLEKTRQALTADQINEATYVHIHGN 163


>03_01_0081 +
           645214-645228,645791-645856,645973-646142,646265-646319,
           646434-646499,646604-646687,647091-647168,647425-647508,
           648000-648302,648402-648572,649098-649288,649406-649808,
           650368-650619,650696-651196,651306-651403,651810-651911,
           652016-652178
          Length = 933

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 142 PMSDNFSHYGLRDAFGCVFVGSLGTMSEARAMC--VPWTGLRERSEEQDI 285
           P    + H  +RDA GC    SLG + +   +   +P  GL +R EE ++
Sbjct: 559 PFQKVYLHPMIRDAHGCKMSKSLGNVIDPVDVINGIPLEGLLKRLEEGNL 608


>06_01_1087 +
           8901950-8902102,8902960-8903996,8904438-8904586,
           8905437-8905690,8905785-8908799,8908889-8909001,
           8909975-8910164,8910399-8910512,8910591-8910698,
           8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 193 VFVGSLGTMSEARAMCVPWTGLRERSEEQDIS 288
           V  G +G  S    + +PW GL  +  + DIS
Sbjct: 253 VLTGPIGGFSGKLNLSIPWNGLNFKKLDADIS 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,949,238
Number of Sequences: 37544
Number of extensions: 187535
Number of successful extensions: 416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)