Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29f16
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 31 0.18
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 30 0.31
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 28 0.96
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 26 3.9
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 3.9
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 9.0
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 25 9.0
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.0
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 25 9.0
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 30.7 bits (66), Expect = 0.18
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -1
Query: 291 CCFCHIYV*KLDCLYNLTILCSSVSVFLIFLVRTSAGVVVPVFRHQR 151
CC +Y+ D + N ++CS+ ++ + L+ S+ V +P + +R
Sbjct: 175 CCILFVYIKSGDLILNKALICSTCTISAVLLLIVSS-VCIPFWTFER 220
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 29.9 bits (64), Expect = 0.31
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = +3
Query: 282 RNSKMTKNVAKIDVKSCVKAEPPHPCDPIVPCDPLKQEEGECPTPSLCVEKLKNPAHAGE 461
RN+ +T N A+ VKS + + P P D V K +E EKL++ G
Sbjct: 327 RNANLTLNEAQQSVKSLTERQGPRPSDNGVQDLQEKMQEVNAEKLQHENEKLESSHELGS 386
Query: 462 ITKCLPGKFINVTSCAKE 515
I K I++ + +E
Sbjct: 387 IRTLKAQKLIDLDNIKRE 404
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 28.3 bits (60), Expect = 0.96
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 384 LKQEEGECPTPSLCVEKLKNPAHAGEITKCLPGKFIN-VTS 503
++ E+G P +E L+ A GE LPG F+N +TS
Sbjct: 1501 VRSEQGSGPVTDFAIELLRT-AVGGENPMALPGNFVNSITS 1540
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 231 IKLLSCTNNLAFKHKYDRNSKMTKNVAKIDVKSCVKAEPPHP 356
+K +S + + FK++ +RN + A + C E P P
Sbjct: 40 VKAISGVHTVRFKNELERNITIKLGYANAKIYKCSNEECPRP 81
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 261 LDCLYNLTILCSSVSVFLIFLVRTSAGVVVPV 166
L+C N I CS + +F ++ S+ V VP+
Sbjct: 360 LECAINFHIDCSCFDDWRLFSLKESSSVAVPI 391
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 304 FLVILLFLSYLCLKARLFVQLNN 236
FLVI+LF++ LC RLF L N
Sbjct: 649 FLVIVLFIASLC-AVRLFQDLPN 670
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 322 TSIFATFLVILLFLSYLCLKARLFVQLNNFMFIGVC 215
T ++ L+ LL + Y C A +V+ + F+ + +C
Sbjct: 1275 TGLYIVHLLFLLTIFYPCPIAYTYVRNSIFLILSIC 1310
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.0 bits (52), Expect = 9.0
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Frame = +1
Query: 43 KMSDNNNS-------CTQNCKT-QKNKCQPCLGPVTVQKLQDGKPLMPEDRNHDSCACSD 198
K+ D NNS QN + Q + + L P+ K Q+ K L SD
Sbjct: 105 KIEDQNNSLEKTEFIALQNANSLQDTQAKLRLDPLLAIKQQEQKQLQTLMEKRKYSLDSD 164
Query: 199 QKNQEDRHR 225
+K++E RHR
Sbjct: 165 RKSKERRHR 173
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 222 PMNIKLLSCTNNL-AFKHKYDRNSKMTKNVAKIDVKSCVKAEP 347
P+ K +C N + KH+ + S NVAK KA+P
Sbjct: 38 PLQAKGSACNGNSHSLKHETNGASSSNNNVAKSSSHDSFKAKP 80
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 442 TLHMLVK*QNVYQGNSSTLLPAPKRIHHIPATRSPAIRTLQRGAPVRTLHCVCSESRTPL 621
+L ++K V+ G + + A K + A + + A V+ + +C+ES+TPL
Sbjct: 35 SLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESQTPL 94
Query: 622 QK 627
K
Sbjct: 95 VK 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,309
Number of Sequences: 5004
Number of extensions: 62170
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -