Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29f16
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 32 0.43
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502... 31 0.99
11_06_0310 + 22274762-22275412,22275515-22275725,22276713-222773... 30 1.3
10_06_0004 - 9407954-9408007,9408219-9408386,9408441-9408542,940... 30 1.7
09_05_0004 + 20021394-20023430 29 3.0
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777... 28 5.3
11_01_0675 - 5508815-5511277 28 5.3
05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264... 28 5.3
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976... 28 5.3
02_01_0540 + 3948833-3948911,3948979-3949208 28 5.3
04_04_0919 - 29422003-29422267,29422411-29422660,29423163-294234... 28 7.0
12_01_0105 - 823302-823770,823902-824006,824149-824540 27 9.2
01_05_0591 + 23481400-23481479,23481518-23482538,23482574-23482996 27 9.2
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 27 9.2
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 31.9 bits (69), Expect = 0.43
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Frame = +3
Query: 291 KMTKNVAKIDVKSCVKAEPPHPCDPIVPCDPLKQEEGECPTPSLC--VEKLK---NPAHA 455
K+ K + +DV +PP PC P PC+ K E P P C EK K P H
Sbjct: 67 KIIKEILIVDVWPPPLPQPPPPCKP-PPCE--KPPEDCKPKPCHCCSCEKPKPKPKPCHC 123
Query: 456 GEITKC---LPGKFINVTSCAKEDPPHP 530
+ C P C E+PP P
Sbjct: 124 EKPKPCHCEKPKPCEKPPPCKPEEPPKP 151
>01_01_0659 -
5021159-5021266,5021364-5021494,5021619-5021785,
5021950-5022065,5022226-5022381,5022570-5022678,
5023153-5023262,5023807-5023992,5024077-5024667
Length = 557
Score = 30.7 bits (66), Expect = 0.99
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 267 KHKYDRNSKMTKNVAKIDVKSCVKAEPPHPCDPIVPCDPL 386
+HK+ + ++ N K D + +EP PIVPCD +
Sbjct: 152 RHKHLQVRELLVNFGKFDPRKMESSEPDAILKPIVPCDEI 191
>11_06_0310 +
22274762-22275412,22275515-22275725,22276713-22277388,
22277739-22277816,22278228-22278573
Length = 653
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Frame = +3
Query: 420 LCVEKLKNPAHAGEITKCLPGKFINVTSCAKEDPPHPCDALACNTD---LTKRRPCSDPP 590
LC EKL A + + P + A PP CDA A + D K PC PP
Sbjct: 342 LCWEKLAEMGEAA-VWRKRPDAAVVSCPTATPAPPRTCDAAAASPDDVWYKKMEPCITPP 400
>10_06_0004 -
9407954-9408007,9408219-9408386,9408441-9408542,
9408710-9408934,9409889-9410047,9411768-9411900,
9412827-9413758,9413842-9413987,9415863-9416082
Length = 712
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 197 SEQAQESWFRSSGIRGFPSWSFWTVTGPRHG*HLF 93
S Q + W ++S G P W+ W + GP HL+
Sbjct: 487 SHQVTDLWAKTSPDAGDPMWALWPMGGPWLATHLW 521
>09_05_0004 + 20021394-20023430
Length = 678
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 619 TGFLIRCTHNGGSEQGRLFVRSV 551
TG L C+H+G EQGR F S+
Sbjct: 494 TGLLTACSHSGLLEQGRAFFESM 516
>11_06_0325 +
22376195-22377001,22377136-22377525,22377638-22377778,
22377888-22378067,22378268-22378447,22378536-22378637,
22378768-22378896,22379318-22379422,22379528-22379623
Length = 709
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 487 SSTLLPAPKRIHHIPATRSPAIRTLQRGAPVRTLHCVCSESRT 615
SS LL + R+ P+ SP+ R L+R AP+ HC + S T
Sbjct: 5 SSKLLRSSLRLPPSPSLPSPSSRRLRRHAPI---HCRLTSSTT 44
>11_01_0675 - 5508815-5511277
Length = 820
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 333 VKAEPPHPCDPIVPCDPLKQEEGECPTPSLCVE 431
V A+PP PC P C P G C+E
Sbjct: 311 VYAQPPDPCTPFATCGPFSVCNGNSDLFCDCME 343
>05_07_0181 -
28225396-28225587,28226009-28226068,28226150-28226416,
28227167-28227232,28228164-28228963,28229565-28229673,
28230391-28232097
Length = 1066
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = -2
Query: 617 GVLDSLHTQWRVRTGAPLCKVR----IAGERVAGMWWILFGAGSNVDE 486
G + + Q RT AP+ K+R I + +A M +FG+G NV E
Sbjct: 299 GAREEIQVQGNARTRAPMDKIRKIPNIPQDSMARMDGTIFGSGGNVLE 346
>05_03_0387 +
13396158-13396271,13396390-13396434,13397004-13397632,
13397727-13397874,13397971-13398147,13398527-13398595,
13398699-13398788,13399000-13399158,13399663-13399753,
13399917-13400008,13400009-13400233,13400394-13400585
Length = 676
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 524 TSLRRARLQYGPYKEAPLF--GPSIVCAANQEP 616
T L + L+YGPY++ P F P +V N P
Sbjct: 191 TKLAESELKYGPYEDLPPFSYSPMVVHYENNNP 223
>02_01_0540 + 3948833-3948911,3948979-3949208
Length = 102
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +3
Query: 378 DPLKQEEGECPTPSLCVEKLKNPAHAGEITKCLPGKFINVTSCAKEDPP-HPCDALACNT 554
DP + G C P+ C+ N + G + K + +C E PP P A+ +
Sbjct: 37 DPSQTFRGLCGHPTNCIACCTNEGYTGGYCTTVRHKCMCTKACGGESPPDDPPSAMPASP 96
Query: 555 DLTKR 569
T R
Sbjct: 97 VTTTR 101
>04_04_0919 -
29422003-29422267,29422411-29422660,29423163-29423481,
29423625-29424794,29424879-29425388,29425449-29425607
Length = 890
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 88 QKNKCQPCLGPVTVQKLQDGKPLMPED--RNHDSCACSDQKNQEDR 219
Q+ C PC+G + V L D P P D N SC + K+ +R
Sbjct: 123 QRGACAPCIGDIVV--LTDTVPRRPSDLASNGRSCCLAHVKDVVNR 166
>12_01_0105 - 823302-823770,823902-824006,824149-824540
Length = 321
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/110 (20%), Positives = 40/110 (36%)
Frame = +3
Query: 234 KLLSCTNNLAFKHKYDRNSKMTKNVAKIDVKSCVKAEPPHPCDPIVPCDPLKQEEGECPT 413
K + +L + Y+ + + V +C K D +V + C +
Sbjct: 183 KTVQQREDLHHANSYNGDHPVMYTVVYYGQHTCCKGPAASADDHVVVEASQISTDSHCQS 242
Query: 414 PSLCVEKLKNPAHAGEITKCLPGKFINVTSCAKEDPPHPCDALACNTDLT 563
P +L+ AHAG+ ++C +S ED D L +LT
Sbjct: 243 PGSSSSELQAAAHAGDSSQCSNISVTCSSSVVVEDCNKLLDMLPAADELT 292
>01_05_0591 + 23481400-23481479,23481518-23482538,23482574-23482996
Length = 507
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 578 TGAPLCKVRIAGERVAGMWWILFGAGSNVDEF 483
TGA + + GER++ + WI F A NV E+
Sbjct: 119 TGAGVVLISPTGERLSYVLWIHFFASHNVAEY 150
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/68 (26%), Positives = 25/68 (36%)
Frame = +3
Query: 330 CVKAEPPHPCDPIVPCDPLKQEEGECPTPSLCVEKLKNPAHAGEITKCLPGKFINVTSCA 509
C + P PC PC PL +CP C +K P H G + + N +
Sbjct: 581 CQRVREP-PCSH--PC-PLPCHLNDCPP---CKALVKRPCHCGAMVHAFECMYYNNLNAT 633
Query: 510 KEDPPHPC 533
K+ C
Sbjct: 634 KQQKVRSC 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,189,175
Number of Sequences: 37544
Number of extensions: 447546
Number of successful extensions: 1441
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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