Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29f10
         (294 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4S0T3 Cluster: Chromosome undetermined SCAF14779, whol...    31   6.4  
UniRef50_Q8NN31 Cluster: Predicted transcriptional regulators; n...    30   8.5  

>UniRef50_Q4S0T3 Cluster: Chromosome undetermined SCAF14779, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF14779, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 706

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 143 GKDEWTTSRPAS*VPPPTLRNDVFPPG*AFARPP 244
           G + W ++RPAS   PP   +D   PG  F  PP
Sbjct: 235 GSELWESTRPASLSHPPHRASDASGPGGGFFYPP 268


>UniRef50_Q8NN31 Cluster: Predicted transcriptional regulators; n=4;
           Actinomycetales|Rep: Predicted transcriptional
           regulators - Corynebacterium glutamicum (Brevibacterium
           flavum)
          Length = 192

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 241 WASKGSARREHVISQGGWRHLR 176
           W SKG+ + E+ +S+ GW  LR
Sbjct: 60  WGSKGATKTEYALSEKGWEALR 81


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,614,885
Number of Sequences: 1657284
Number of extensions: 5002801
Number of successful extensions: 9469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9468
length of database: 575,637,011
effective HSP length: 75
effective length of database: 451,340,711
effective search space used: 9929495642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)