Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29f10
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   1.8  
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    24   5.3  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          24   5.3  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    23   7.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    23   7.1  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    23   7.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    23   9.3  

>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 12  FLTKCFLFIYRLFST 56
           FL KCFL+I R  ST
Sbjct: 57  FLAKCFLYILRCMST 71


>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 74  AFRYYYIFLIKS*QKKYLPLYAIGKDEWTTS 166
           A R   + L+ +    Y P+  IGKD W ++
Sbjct: 168 ALRLRGLILVPTGDSLYTPIENIGKDAWISA 198


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -2

Query: 230 RLSQEGTRHFSRWVAALKKRVVK*STHLYQWRIKEGIFFVKILLEICNNI*KPL 69
           +++QE TR  S    A  KR  K S    +  ++EG     +LLEI N I KP+
Sbjct: 50  KMAQE-TRAISSISEAANKRARKLSKRRAKKPVEEGSSGHVLLLEIENLIEKPV 102


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 108 LNKKNTFLYTPLVKMSGLLHDPLLK 182
           +N+ + F Y+PLV  S   H+P++K
Sbjct: 79  INQVDQFDYSPLVLASLCGHEPVVK 103


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 140 IGKDEWTTSRPAS*VPPPTLRNDVFPPG*AFARPPI 247
           IGK    ++ P S   PPT ++++ PP  A  RP I
Sbjct: 115 IGKSS-ASAAPPSAPAPPTPQSELRPPTSAPPRPSI 149


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 153 SGLLHDPLLKCRHPP*EMTCSLLAEPLLAHL 245
           SGL   PLLKC  PP     ++L E L  HL
Sbjct: 267 SGLNPLPLLKCDLPPATTPTAVLDESLF-HL 296


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 174 LLKCRHPP*EMTCSLLAEPLLAHLSS 251
           LL+CR P     C + A   LAHLS+
Sbjct: 623 LLECRLPDSVRICIVRALESLAHLST 648


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,103,776
Number of Sequences: 5004
Number of extensions: 20764
Number of successful extensions: 37
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)