Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29f10
         (294 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    26   5.4  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    26   5.4  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        26   5.4  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z29561-5|CAA82668.1|  395|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AF125459-13|AAD12833.1|  605|Caenorhabditis elegans Hypothetical...    25   9.4  

>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 204  FLKVGGGT*EAGREVVHSS--LPMAYKGRYFFC*DFIRN 94
            F K+G    E G E+V+      + Y  +YFF  DF+RN
Sbjct: 1317 FQKLGSMA-EEGVEIVYEQHLCDLFYNCKYFFAGDFLRN 1354


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 204  FLKVGGGT*EAGREVVHSS--LPMAYKGRYFFC*DFIRN 94
            F K+G    E G E+V+      + Y  +YFF  DF+RN
Sbjct: 1315 FQKLGSMA-EEGVEIVYEQHLCDLFYNCKYFFAGDFLRN 1352


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 204  FLKVGGGT*EAGREVVHSS--LPMAYKGRYFFC*DFIRN 94
            F K+G    E G E+V+      + Y  +YFF  DF+RN
Sbjct: 1315 FQKLGSMA-EEGVEIVYEQHLCDLFYNCKYFFAGDFLRN 1352


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
           protein F25C8.3b protein.
          Length = 3175

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 140 IGKDEWTTSRPAS*VPPPTLRNDV 211
           +GKDE T  RP+   PP   R DV
Sbjct: 254 LGKDENTVRRPSIVPPPKPPRTDV 277


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
           protein F25C8.3a protein.
          Length = 3184

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 140 IGKDEWTTSRPAS*VPPPTLRNDV 211
           +GKDE T  RP+   PP   R DV
Sbjct: 254 LGKDENTVRRPSIVPPPKPPRTDV 277


>Z29561-5|CAA82668.1|  395|Caenorhabditis elegans Hypothetical
           protein R10E12.2 protein.
          Length = 395

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 146 KDEWTTSRPAS*VPPPTLRNDVFPPG*AFARPP 244
           +D + T RP    PPP++   +FPP      PP
Sbjct: 343 RDGYQTYRP----PPPSVHPPIFPPQTQLFHPP 371


>AF125459-13|AAD12833.1|  605|Caenorhabditis elegans Hypothetical
           protein Y25C1A.3 protein.
          Length = 605

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 243 GGRAKAQPGGNTSFLKVGGGT*EAGREVVHSSLPMA 136
           G  A    GG+T+    GG T   G  V  S  P A
Sbjct: 338 GSTASTAAGGSTATTAAGGSTASTGVTVASSPAPAA 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,047,792
Number of Sequences: 27780
Number of extensions: 118247
Number of successful extensions: 253
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)