Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29f08
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819... 30 1.6
02_01_0643 - 4808505-4809180,4809290-4809561 29 3.6
03_05_0042 + 20180151-20180468,20181595-20181665,20182929-201830... 29 4.8
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 29 4.8
08_02_1323 - 26136015-26137876,26138300-26139229,26139922-261400... 28 8.4
08_01_0068 + 471729-472460,472578-472655,473270-473507,474130-47... 28 8.4
06_03_1080 + 27436389-27436742,27437573-27437804,27437911-274381... 28 8.4
>07_03_1339 +
25879246-25881154,25881502-25881696,25881777-25881928,
25882147-25882607,25883723-25883810,25884066-25884135,
25884288-25884361,25884456-25884524,25884647-25884724,
25884946-25885070,25885168-25885240,25885508-25885566,
25885650-25886027,25886134-25886236,25886332-25886544
Length = 1348
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 44 DPDENPSETTEIKNVLPDV-VHSQQIAVGTTDGENDKKQGTQLQSDNEDSQTESISEHIP 220
DP+ PS++ +K V +H + IA T D + KK S ++ S + E
Sbjct: 254 DPESVPSDSNVVKEVCSHAEIHCEVIAEKTPDNGSSKKMTVDDISSDDTSTNTKLEESSA 313
Query: 221 SRLECLS 241
C+S
Sbjct: 314 KGEPCVS 320
>02_01_0643 - 4808505-4809180,4809290-4809561
Length = 315
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +2
Query: 53 ENPSETTEIKNVLPDVVHSQQIAVGTTDGENDKKQGTQLQSDNEDSQTESISEHIPSRLE 232
+N E I + + +++ + A ++ END+ L S +DS S S H P +
Sbjct: 234 QNKQEQRPIMSEVVELLKGES-AEKLSNLENDEMFKPDLTSSFQDS---SHSSH-PDSSD 288
Query: 233 CLSESENSKAQEI--VIVKPELVP 298
C++E +NSKA I + E VP
Sbjct: 289 CITEEKNSKADTIDEAVDSSETVP 312
>03_05_0042 +
20180151-20180468,20181595-20181665,20182929-20183087,
20183598-20183664,20183913-20184008,20184687-20184733,
20185113-20185193,20185704-20185806,20185967-20186028,
20187188-20187302,20193191-20195087,20195206-20195492
Length = 1100
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Frame = +2
Query: 374 STSWPIDVNVDMHLISDESP-VNLALSS-------DKERTQNVSIDSPQLQSEPYMDQSL 529
ST DV V + I DE P V+ ++ DKE N+S+ + + L
Sbjct: 675 STEVSFDVPVALVSIVDELPCVSASIEEQGKPCQQDKEEAHNLSVTHDRENRSSLHSEVL 734
Query: 530 QSENYNDSLNNQSNETLG 583
Q+ D+ N SNE LG
Sbjct: 735 QNLVVEDATNTGSNEALG 752
>01_05_0687 + 24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +2
Query: 344 ENQTKDPNKLSTSWPIDVNVDMHL-ISDESPVNLALSSDKERTQNVSIDSPQLQSEPYMD 520
E+++ P + +D + + ++ E L L+S T VS + Q QSE +D
Sbjct: 1271 ESESHSPTSQAADSLLDASDSKSVAVASEEMSQLPLASQATTTDLVSTTAMQPQSEGIVD 1330
Query: 521 QSLQSENYNDSLNNQS 568
+SLQ ++ S + S
Sbjct: 1331 ESLQPQHPPSSTAHDS 1346
>08_02_1323 -
26136015-26137876,26138300-26139229,26139922-26140068,
26140139-26140360,26140513-26140555
Length = 1067
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +2
Query: 35 IMDDPDENPSETTEIKNVLPDVVHSQQIAVGTTDGENDKKQGTQLQSD 178
+ +P +N E + +++ D + + TDG KKQ ++ +D
Sbjct: 819 LTSEPADNVEEEVQSEDIATDPTSHESSTLHITDGAESKKQDAKVAAD 866
>08_01_0068 +
471729-472460,472578-472655,473270-473507,474130-474205,
474820-474961,475326-475619,476037-476249
Length = 590
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 143 NDKKQG-TQLQSDNEDSQTESISEHIPSRLECLSESENSK 259
N K G + ++ N+D + +S+SE +PS+ E + E+ S+
Sbjct: 173 NIKSVGLSSVEDKNQDRKADSVSEPLPSKQETVLENVESE 212
>06_03_1080 +
27436389-27436742,27437573-27437804,27437911-27438159,
27438467-27438517,27438676-27438936,27439019-27439071,
27439201-27439315,27441666-27441920,27442423-27443480
Length = 875
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 185 LHCHFVIGFPVFYRFLHRLSLR-LSVENVRHPEEHSL 78
+ HFV FP F+R L +SL+ L+V V PEE L
Sbjct: 646 MFAHFVTNFPAFHRVLIFVSLQTLAVPKV-SPEERFL 681
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,295,747
Number of Sequences: 37544
Number of extensions: 332889
Number of successful extensions: 875
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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