Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29f08
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42438-7|AAN84875.1|  201|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U42438-6|AAM75370.1|  314|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U42438-5|AAM75369.1|  581|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U42438-4|AAM75371.1|  617|Caenorhabditis elegans Hypothetical pr...    33   0.15 
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical ...    30   1.4  
AF039042-5|AAC48246.1|  307|Caenorhabditis elegans Hypothetical ...    30   1.4  
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    29   3.3  
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    29   4.3  
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   4.3  
AL021497-19|CAA16406.2|  989|Caenorhabditis elegans Hypothetical...    29   4.3  
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    29   4.3  
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z69646-6|CAD44142.1|  287|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AC006708-22|AAF60420.2|  335|Caenorhabditis elegans Hypothetical...    27   9.9  

>U42438-7|AAN84875.1|  201|Caenorhabditis elegans Hypothetical
           protein C09G4.2d protein.
          Length = 201

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 298 RHQFWFYNYNFLGFRIFRFRKTF 230
           RH  WF N++F+GFR  R R  F
Sbjct: 144 RHHIWFDNFDFVGFRAHRIRPPF 166


>U42438-6|AAM75370.1|  314|Caenorhabditis elegans Hypothetical
           protein C09G4.2b protein.
          Length = 314

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 298 RHQFWFYNYNFLGFRIFRFRKTF 230
           RH  WF N++F+GFR  R R  F
Sbjct: 257 RHHIWFDNFDFVGFRAHRIRPPF 279


>U42438-5|AAM75369.1|  581|Caenorhabditis elegans Hypothetical
           protein C09G4.2a protein.
          Length = 581

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 298 RHQFWFYNYNFLGFRIFRFRKTF 230
           RH  WF N++F+GFR  R R  F
Sbjct: 524 RHHIWFDNFDFVGFRAHRIRPPF 546


>U42438-4|AAM75371.1|  617|Caenorhabditis elegans Hypothetical
           protein C09G4.2c protein.
          Length = 617

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 298 RHQFWFYNYNFLGFRIFRFRKTF 230
           RH  WF N++F+GFR  R R  F
Sbjct: 560 RHHIWFDNFDFVGFRAHRIRPPF 582


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 86  VLPDVVHSQQIAVGTTDGENDKKQGTQLQSDNEDSQTE 199
           VL +++  + +A+   + END+   T L+  NED + E
Sbjct: 245 VLKEIIGDKPVALLEKEDENDRSSDTSLEKSNEDIKKE 282


>AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical
           protein Y32B12B.2 protein.
          Length = 789

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +2

Query: 38  MDDPDENPSETTEIKNVLPDVVHSQQIAVGTTDGENDKKQGTQLQSDNEDSQTESISEHI 217
           +D+ DE+  E  + K+ L D   S+       + E++++   +   D EDS  E + EH 
Sbjct: 703 LDESDEDEDELKDRKHGLFDDEASESDGEDEFEDEDEEEPEGE---DLEDSDDERLFEHG 759

Query: 218 PSRLECL-SESENSKAQEIVI 277
           PS+      + +N+K + IVI
Sbjct: 760 PSKKRRFEQQKQNAKRRCIVI 780


>AF039042-5|AAC48246.1|  307|Caenorhabditis elegans Hypothetical
           protein ZK697.3 protein.
          Length = 307

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 420 VTRALLIWHYLLTKKGLKMFLLTVHSCKVNLTWINLFK 533
           VT  +  ++ L    G K F++T+H CK N+  +++ K
Sbjct: 161 VTAFMSFFYRLRNSTGSKHFIITIHLCKGNIVELDMMK 198


>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
           protein C32E12.4 protein.
          Length = 1553

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 41  DDPDENPSETTEIKNVLPDVVHSQQIAVGT-TDGENDKKQGTQLQSDNE--DSQTESISE 211
           +D  +  S +TE      +    ++ + G  T+GE+D++  T  + DNE   SQT S+ +
Sbjct: 613 NDISKRSSSSTEDDEEYEEEDEEEEYSSGDWTEGEDDEEYITDEEEDNEYSVSQTFSLKD 672

Query: 212 HI 217
           HI
Sbjct: 673 HI 674


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
 Frame = +2

Query: 53  ENPSETTEIKNVLPDVVHSQQIAVGTTDG----ENDKKQGTQLQSDNEDSQTESISEHIP 220
           E PS T E +   P+ V   ++A    +     E  KK  T+    +ED   ES  E   
Sbjct: 369 ETPSTTPEQEKT-PEPVDDWEMAHSEDEASAQKEKPKKPATKASDADEDDDEESSDEESD 427

Query: 221 SRLECLSESENSKAQE 268
              E   ESE S + +
Sbjct: 428 EESEDSEESEESSSDD 443


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 452 SDKERTQNVSIDSPQLQSEPYMDQSLQSENYNDSLNN 562
           S +ERT   S +  ++     +  + QSENYN+S N+
Sbjct: 202 SSEERTSKRSKNETEIAVSDILQVASQSENYNESTNS 238


>AL021497-19|CAA16406.2|  989|Caenorhabditis elegans Hypothetical
           protein Y51A2D.7a protein.
          Length = 989

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 137 HRLSLR--LSVENVRHPEEHSLFP*FPMDFR 51
           HRL +R  +  E  +HP  H  F  FP DFR
Sbjct: 550 HRLLVRPGIPAETRQHPRSHEPFAQFPNDFR 580


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.2 protein.
          Length = 1173

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
 Frame = +2

Query: 53  ENPSETTEIKNVLPDVVHSQQIAVGTTDG----ENDKKQGTQLQSDNEDSQTESISEHIP 220
           E PS T E +   P+ V   ++A    +     E  KK  T+    +ED   ES  E   
Sbjct: 369 ETPSTTPEQEKT-PEPVDDWEMAHSEDEASAQKEKPKKPATKASDADEDDDEESSDEESD 427

Query: 221 SRLECLSESENSKAQE 268
              E   ESE S + +
Sbjct: 428 EESEDSEESEESSSDD 443


>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
           protein F59A6.5 protein.
          Length = 1286

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
 Frame = +2

Query: 83  NVLPDVV--HSQQIAV-----GTTDGENDKKQGTQLQSDNEDSQTESISEHIPSRLECLS 241
           N+L D +  H  QI +      T + E    Q T  ++ ++  +TE+  E   SRL  L 
Sbjct: 103 NLLEDDLKHHQSQIRILQNKCSTLEMEKQTLQETIQRAQDDKKETETELESSRSRLHVLE 162

Query: 242 ESENSKAQEIVIVKPEL 292
           +  ++KA +I +V  +L
Sbjct: 163 KELSAKANDIFMVTKDL 179


>Z69646-6|CAD44142.1|  287|Caenorhabditis elegans Hypothetical
           protein F57C7.3b protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 22/77 (28%), Positives = 32/77 (41%)
 Frame = +2

Query: 68  TTEIKNVLPDVVHSQQIAVGTTDGENDKKQGTQLQSDNEDSQTESISEHIPSRLECLSES 247
           T  +KN + +V  S  I     D E +   G+   +D+ED      S   PS     S+ 
Sbjct: 42  TKSLKNGISEVEGSANIPGRLADIEVN---GSGYPTDDEDGDDVHGSGKPPSSATTKSDK 98

Query: 248 ENSKAQEIVIVKPELVP 298
             S +  +V  KP  VP
Sbjct: 99  VTSPSHAVVTAKPTTVP 115


>AC006708-22|AAF60420.2|  335|Caenorhabditis elegans Hypothetical
           protein Y110A7A.2 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 434 VNLALSSDKERTQNVSIDSPQLQSEPYMDQSLQSE 538
           + + LS +K++TQ   +DS + QSE       +SE
Sbjct: 301 IKVLLSKEKQKTQAKEVDSSECQSEMVGSSKAKSE 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,681,365
Number of Sequences: 27780
Number of extensions: 326927
Number of successful extensions: 1055
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)