Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29f04
         (679 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22SJ6 Cluster: Putative uncharacterized protein; n=1; ...    37   0.52 
UniRef50_Q7R9U0 Cluster: CCAAT-box DNA binding protein subunit B...    35   1.6  
UniRef50_A4VDE7 Cluster: Putative uncharacterized protein; n=1; ...    35   2.1  
UniRef50_Q239X8 Cluster: Putative uncharacterized protein; n=2; ...    34   2.8  
UniRef50_Q4C9X7 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  
UniRef50_Q8IL12 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  

>UniRef50_Q22SJ6 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1370

 Score = 36.7 bits (81), Expect = 0.52
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = -1

Query: 163 ILSFSNVRLCREILIFMSGIPAQMHVHYKNIFLI*SDLGCYNYYYRMLN 17
           ILS+   +    ILIF+  +P +   +YKNIFL    L   NY ++++N
Sbjct: 658 ILSYFYQQKNEYILIFIKELPHRQKYYYKNIFLFFYSLSMKNYEFKLIN 706


>UniRef50_Q7R9U0 Cluster: CCAAT-box DNA binding protein subunit B;
           n=2; Plasmodium (Vinckeia)|Rep: CCAAT-box DNA binding
           protein subunit B - Plasmodium yoelii yoelii
          Length = 370

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +2

Query: 227 YTFNICEYIIFECHTLYTLI*AKFFCVLHIIKMNENQINVTNSNKTKSRPLHGLKHLQEK 406
           Y+   C + IF+CHT   +   K   VL     +   I + NSN+ K + ++ +KH +E 
Sbjct: 206 YSSYNCMFPIFKCHTYNFMSKKKALNVLKDNLSDSELIALNNSNENKKKIMNMIKHKKEI 265

Query: 407 CNIDSDVSN 433
            N    + N
Sbjct: 266 INYTDKILN 274


>UniRef50_A4VDE7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 181

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = -1

Query: 223 SMVITNH----RLYNFTFYKVVFIILSFSNVRLCREILIFMSGIPAQMHVHYKNIFLI*S 56
           S +I  H    R   F+ Y + ++   F  +  C  I IF   I  QM V+    FL   
Sbjct: 26  SQIIVTHSKLKRSIKFSKYFITYLFQLFYKIIFCFLIQIFQ--ITFQMEVNIN--FLYYD 81

Query: 55  DLGCYNYYYRMLNKHI 8
           D GCY YYY   + H+
Sbjct: 82  DDGCYYYYYYFNDYHL 97


>UniRef50_Q239X8 Cluster: Putative uncharacterized protein; n=2;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 924

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 485 FKFQCKTFIEISKYFSSPLRKTASYISE--NCLVSYPNSFAVEYKRG 619
           FKF   TFI+IS  F SP    +SY+S   +C  S  N   +EY RG
Sbjct: 790 FKFFDITFIDISSIFGSP----SSYLSNSLDCFFSQTNILPIEYLRG 832


>UniRef50_Q4C9X7 Cluster: Putative uncharacterized protein; n=1;
           Crocosphaera watsonii WH 8501|Rep: Putative
           uncharacterized protein - Crocosphaera watsonii
          Length = 419

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 326 NENQINVTNSNKTKSRPLHGLKHLQEKCNIDSDVSN 433
           N NQ+N  N+N +    LH +KH  E C    ++ N
Sbjct: 167 NINQLNYNNTNNSLEFCLHSIKHSSEYCEFPENIDN 202


>UniRef50_Q8IL12 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 670

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 250 VLTYIKCILSMVITNHRLYNFTFYKVVFIILSFSNVRLCREILIF 116
           ++T I C    VIT+  LYN T YK +  IL  +N  + ++I  +
Sbjct: 147 IITNIVCNNKKVITSSNLYNNTIYKTLLYILKNTNNEINKKIYTY 191


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,201,061
Number of Sequences: 1657284
Number of extensions: 10702050
Number of successful extensions: 21335
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21310
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)