Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29f04
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0370 + 2814888-2814979,2815450-2815620,2815753-2815834,281...    31   0.64 
11_06_0513 + 24466131-24469487                                         28   7.9  
03_06_0015 - 31036091-31036202,31037839-31037916,31038408-310386...    28   7.9  

>11_01_0370 +
           2814888-2814979,2815450-2815620,2815753-2815834,
           2816275-2816316,2816397-2816456,2816817-2816913,
           2817382-2819024,2819155-2819256,2819369-2819509,
           2819625-2819750,2819935-2820096
          Length = 905

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 308 LHIIKMNENQINVTNSNKTKSRPLHGLKHLQEKCN 412
           L +I  +E QI  ++S + +SRPLHG  ++Q   N
Sbjct: 172 LPVISSSEKQIKNSSSQQGRSRPLHGASNVQSTEN 206


>11_06_0513 + 24466131-24469487
          Length = 1118

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +2

Query: 329 ENQINVTNSN--KTKSRPLHGLKHLQEKCNIDSDVSNRK 439
           EN  N++N +  K + +  H L+HL   CN+D++  NRK
Sbjct: 814 ENIANISNEDAEKIQLQKKHELEHLTLNCNMDAE--NRK 850


>03_06_0015 -
           31036091-31036202,31037839-31037916,31038408-31038655,
           31038744-31038792,31038919-31039890,31040059-31040894
          Length = 764

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 305 VLHIIKMNENQINVTNSNKTKSRPLHGLKHLQEKCNIDS 421
           VLH  + N + IN+  S  +    LHGL   +E+  IDS
Sbjct: 220 VLHA-QFNSSVINIDGSAGSGMEKLHGLYECEEQMEIDS 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,325
Number of Sequences: 37544
Number of extensions: 251726
Number of successful extensions: 377
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)