Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29f04
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   0.88 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.5  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   3.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.2  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 25  YDNNNYSSLNPIKSRKYFYSVRASE 99
           Y+NNNY  L     RK +Y++   E
Sbjct: 91  YNNNNYKKLYCNNYRKLYYNINYIE 115


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 25  YDNNNYSSLNPIKSRKYFYSVRASE 99
           Y+NNNY  L     +K +Y++   E
Sbjct: 91  YNNNNYKKLYCNNYKKLYYNINYIE 115


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 25  YDNNNYSSLNPIKSRKYFYSVRASE 99
           Y+NNNY  L     +K +Y++   E
Sbjct: 91  YNNNNYKKLYCNNYKKLYYNINYIE 115


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 571 LPSILSEFFCCGIQTGGISDGI 636
           LP +    FCCG++  G + G+
Sbjct: 79  LPPVQDADFCCGMRWPGDATGL 100


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 25  YDNNNYSSLNPIKSRKYFYSVRASE 99
           ++NNNY++ N    +K +Y++   E
Sbjct: 91  HNNNNYNNNNYNNYKKLYYNINYIE 115


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 25  YDNNNYSSLNPIKSRKYFYSV 87
           Y+NNNY++      +K +Y++
Sbjct: 338 YNNNNYNNNYNNNCKKLYYNI 358


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 31  NNNYSSLNPIKSRKYFYS 84
           N NY SLN    ++ +YS
Sbjct: 447 NENYKSLNLAAQKREYYS 464


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 25  YDNNNYSSLNPIKSRKYFYSVRASE 99
           Y+N NY++ N    +K +Y++   E
Sbjct: 101 YNNYNYNNNNYNNYKKLYYNINYIE 125


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 116 HERYSGSDARTL*KYFLDL 60
           H+RY  +  R L K FLD+
Sbjct: 806 HDRYLPNSLRILLKRFLDI 824


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,903
Number of Sequences: 438
Number of extensions: 3646
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)