Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29f02
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    99   3e-22
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    35   0.009
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    34   0.020
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr...    30   0.25 
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    29   0.75 
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    28   1.00 
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    28   1.00 
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    28   1.00 
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   1.7  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    27   2.3  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   4.0  
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    26   4.0  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   5.3  
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    26   5.3  

>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score =   99 bits (238), Expect = 3e-22
 Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
 Frame = +2

Query: 182 VDQLLQHVAQNVERQIDSEIER--LDALESGDLEAIRQQRIAEMKLRAKQKQEWLAIGHG 355
           VD      A     + DSE+E      L+  D  A R+QR+  +K    + +     GH 
Sbjct: 76  VDLYADTYATQAATESDSELEDALFSQLDEFDDTAYREQRLEMLKKEFARVEAAKEKGHM 135

Query: 356 EYTEIDGEKEFFAVCNKSQNVVCHFYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERA 535
           ++  ++ E+E       S+ VV HFY  D  RCKI+D HL+ +AK H ET+F++++   A
Sbjct: 136 QFLTVENEREVMDFTLSSKKVVIHFYHPDFIRCKIIDSHLEKIAKVHWETKFIRIEAANA 195

Query: 536 PFLTGRLKIRVIPTLGLVKDNKTKDFIVGFTDLGN 640
           PFL  +L ++V+P +    +++  D I+GF DLGN
Sbjct: 196 PFLVVKLGLKVLPAVLCYVNSQLVDKIIGFADLGN 230


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 17/86 (19%), Positives = 41/86 (47%)
 Frame = +2

Query: 365 EIDGEKEFFAVCNKSQNVVCHFYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERAPFL 544
           ++    EF ++  + + VV  F+ +    CK +    +  +  + +  F+K+DV++   +
Sbjct: 4   QVSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEI 63

Query: 545 TGRLKIRVIPTLGLVKDNKTKDFIVG 622
                +  +P+  L K+ +  + IVG
Sbjct: 64  AAEAGVHAMPSFFLYKNGEKIEEIVG 89


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
 Frame = +2

Query: 194 LQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQ--EWLAIGHGEYT- 364
           L H  +   + +D   E  D  +   L+  R +R+ E K +  + +      I   EYT 
Sbjct: 40  LAHENRLENKDLDELAELEDEEDDEFLQMYRNKRMQEWKDQMSKAKFGSVYPISKPEYTA 99

Query: 365 EI-DGEKEFFAVCNKSQNVVCHFYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERA 535
           E+ D  KE F        VV H ++   P CK++   L+ LA  + + +FVK+  ++A
Sbjct: 100 EVTDASKEVF--------VVVHMFQDSLPACKLLAAILERLAPMYPQIKFVKIPGKQA 149


>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +2

Query: 179 NVDQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAK 322
           N++ LL H  +++   I+   E LDA+E   L   R+ ++AE+  RA+
Sbjct: 148 NLNNLLDHWLRHIRDVIEDNREELDAIEDPQL---RRLKLAELNTRAQ 192


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 346 WSRRIHRDRWRERVLCRLQ*KSECRVPFLQVGLAPLQDRGHAPQDL 483
           W RR H  RW  ++ C     S  ++P   V + P +D    PQD+
Sbjct: 42  WFRRRHHCRWCGKLFCYNCCNSFAKLPVSSVSVDPTEDL--IPQDM 85


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +1

Query: 304 NEIKSKAETRVVGHWSRRIHRDRWRERVLCRLQ*KSECRVPFLQVGLAPLQDRGHAPQDL 483
           NE K K+   +VG  S      + ++  +C L  K+   V +L  GLAPL ++G    D 
Sbjct: 48  NEAKGKS---IVGAHSLEEFVSKLKKPRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDG 104

Query: 484 GQEAHRDAVR 513
           G   + D  R
Sbjct: 105 GNSHYPDTTR 114


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 368 SLC--ILRDQWPTTLVSALLLISFQLCVVV*SPLDPHFPE 255
           S+C  ILRDQW   L  + +L+S    +   +P DP  PE
Sbjct: 83  SICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPE 122


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 15/68 (22%), Positives = 34/68 (50%)
 Frame = +2

Query: 419 VCHFYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERAPFLTGRLKIRVIPTLGLVKDN 598
           V  FY      CK +   L+ L++++ +  F+ ++ ++   +  +  +  +PT+ L +  
Sbjct: 39  VVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKG 98

Query: 599 KTKDFIVG 622
           +  D IVG
Sbjct: 99  QELDRIVG 106


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 188 QLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQ 331
           QL    A  +ERQ  +  +   ALE+  +    QQRIA+ +L  +Q Q
Sbjct: 360 QLAAQQAAEMERQRMAAQQHQQALEAIQMAQAEQQRIAQEQLAQQQFQ 407


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 600 LLSFTSPSVGITRILSRPVRNGALST 523
           ++S ++PS G++ +L+ P R  ALST
Sbjct: 269 IVSSSAPSSGVSSVLNTPTRPHALST 294


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
            complex subunit Taf111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 185  DQLLQHVAQNVERQIDSEIERLDALESGDLEAI--RQQRIAEMKLRAKQKQEW 337
            D ++ H      R+ID +   LDA+     EAI  R +R  E +L AK ++ W
Sbjct: 869  DPIVIHAYLKKRREIDEQSTALDAVVPTGDEAIDRRNRRRLEQEL-AKSQKNW 920


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/73 (21%), Positives = 30/73 (41%)
 Frame = +2

Query: 404 KSQNVVCHFYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERAPFLTGRLKIRVIPTLG 583
           K Q ++ +FY   +  CK ++      AK      F+K++ E+   +     +  +P   
Sbjct: 19  KEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFLKIEAEKFSDIAESFDVNAVPLFV 78

Query: 584 LVKDNKTKDFIVG 622
           L+   K    I G
Sbjct: 79  LIHGAKVLARISG 91


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/66 (19%), Positives = 35/66 (53%)
 Frame = +2

Query: 185 DQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQEWLAIGHGEYT 364
           +QLL    + ++++I  +   +++LES +L  +  ++I  ++ R  + ++ L    G+  
Sbjct: 750 EQLLVEKIEGIKKRILLKRREVNSLESQELSVLDTEKIQTLERRISETEKELESYAGQLQ 809

Query: 365 EIDGEK 382
           +   E+
Sbjct: 810 DAKNEE 815


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 63  NRLSYWKLRNKSGPTVYFQFF 1
           NRLS W LR K  PT+ F  +
Sbjct: 137 NRLSQWSLRYKDIPTLGFTHY 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,077
Number of Sequences: 5004
Number of extensions: 50611
Number of successful extensions: 148
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)