Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29e23
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 29 0.51
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 29 0.67
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 29 0.89
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 28 1.2
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 28 1.2
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 28 1.2
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 28 1.6
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 27 2.1
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 2.1
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 27 2.1
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 27 3.6
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 3.6
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.6
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 3.6
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 27 3.6
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 6.3
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 26 6.3
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 6.3
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 26 6.3
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 26 6.3
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 26 6.3
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 25 8.3
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 25 8.3
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.3
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 25 8.3
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 8.3
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 8.3
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 25 8.3
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 29.5 bits (63), Expect = 0.51
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Frame = +2
Query: 179 QRFPRQKPNTLYDRITKNLNKSSPQPTFATSKLPKIVKPPASYASDKNIRTKEKVDAGDN 358
Q+ P + + ++K+L SS +T + A +SD+ R + +D N
Sbjct: 230 QKTPVSRSSDTTTELSKDLISSSSS-IHSTYSSAQTGLTSAKVSSDEYARQVDTLDTKLN 288
Query: 359 FAGTSKRMG--SQKSNKNYKLEKSKPSHIPRRLQEATAKRNSINTEDIPSFEQTEEKTLA 532
+ SK S+ ++ LEKS S + + KRN I TE++ ++++++ L
Sbjct: 289 SSSKSKVQEEISRLKSELRDLEKSGGSSNSKPVVVRPKKRN-ILTEELEKYKKSKKVVLG 347
Query: 533 EIKNIQ 550
+ KN++
Sbjct: 348 KRKNLE 353
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 29.1 bits (62), Expect = 0.67
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 386 SQKSNKNYKLEK-SKPSHIPRRLQEATAKRNSINTEDIPSFEQTEEKTLAEIKNIQ 550
+++S K K+ K KPS + + ++ A I+ EDI +F EE + + N++
Sbjct: 11 TKRSLKKKKIRKIEKPSLVSKTSRDKNASITDIHEEDIEAFSD-EENKIVHLNNLK 65
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 28.7 bits (61), Expect = 0.89
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 284 IVKPPASYASDKNIRTKEKVDAGDNFAGTSKRMGSQKSNKNYKLEKSKP 430
I KPPAS KN + K+ + F G + + Q+S +K KP
Sbjct: 31 ITKPPASKKKRKNRKKKKNNGPSEQFVGNND-LEEQRSGSIDSKDKEKP 78
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +2
Query: 365 GTSKRMGSQKSNKNYKLEKSKPSHIPRRLQEATAKRNSINTEDIPSFEQTEEK 523
G+ ++M QK+N +YK EK+ + L++ + + I S++ +E+
Sbjct: 186 GSGQKMRVQKANIDYKKEKTVNKDVGGALKKKALRLRQQQMQQISSWDDVDEE 238
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 28.3 bits (60), Expect = 1.2
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 2/123 (1%)
Frame = +2
Query: 161 KTSKNDQR-FPRQKPNTLYDRITKNLNKSSPQPTFATSKLPKIVKPPASYASDKNIRTKE 337
K S N Q + KP L D + L K SP+P+ +S + S +N+ TK+
Sbjct: 515 KISANKQTDLLQNKPEALLDLENRFLPKPSPKPSEFSSSVGSKQNLSMDIPSVQNVSTKQ 574
Query: 338 KVDAGDNFAGTSKRMGSQKSNKNYKLEKSKPSHIPRR-LQEATAKRNSINTEDIPSFEQT 514
K N SK ++ Y S+P+ + L E + K +P E +
Sbjct: 575 K---STNDTDNSKLKINKPLTGGYAPLPSRPNRMNHSVLNEKSNKEFVRGPRVLPPIEVS 631
Query: 515 EEK 523
K
Sbjct: 632 SSK 634
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 28.3 bits (60), Expect = 1.2
Identities = 22/90 (24%), Positives = 35/90 (38%)
Frame = +2
Query: 221 ITKNLNKSSPQPTFATSKLPKIVKPPASYASDKNIRTKEKVDAGDNFAGTSKRMGSQKSN 400
IT NL K P P A+ LP+++ P + + + A +K +Q +
Sbjct: 278 ITDNLCKLVPDPAEASDFLPELI-PDVERIAQTAAMPEVRALASHALTTLNKAAAAQAAK 336
Query: 401 KNYKLEKSKPSHIPRRLQEATAKRNSINTE 490
EK + L+EA K S+ E
Sbjct: 337 AANNSEKQALDSACKELREAVLKNTSVPHE 366
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 332 KEKVDAGDNFAGTSKRMGSQKSNKNY-KLEKSKPSHIPRRLQEATAKRNSINTEDIPSFE 508
KEK++A G KR+ ++KS+ + K +PS R++ AT + IPS +
Sbjct: 187 KEKIEATPKIDG-GKRLKNEKSSAEISQTSKQRPSRRSARVRMATDNAQK-SPSPIPSPK 244
Query: 509 QTEEK 523
+T +K
Sbjct: 245 KTAKK 249
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 27.5 bits (58), Expect = 2.1
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Frame = +2
Query: 296 PASYAS-DKNIR-TKEKVDAGDNFAGTSKRMGSQKSNKNYKLEKSKPSHIPRRLQEATAK 469
PA + S +K I K+K G F K+ + ++ + S P+RLQEA AK
Sbjct: 446 PADWLSFNKQIEWLKQKNSDGKLFQKLIKKYILENKSR-FVFTMLPSSTFPQRLQEAEAK 504
Query: 470 R-----NSINTEDIPSFEQTEEKTL 529
+ + + EDI E+T K L
Sbjct: 505 KLQERTSKLTDEDIAEIEKTSVKLL 529
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 535 NKKHSKGSTFDQYSH-DESMPQTPKEFEKENETRKTNERNKN 657
NK K + + SH +ES+P T K+ +K+N+ K N ++ +
Sbjct: 67 NKNDPKKTHNEDESHTNESLPSTDKKKKKDNDDFKQNLKSSS 108
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +2
Query: 149 LDRLKTSKNDQRFPRQKPNTLYDRITKNLNKSSPQPTFATSKLPKIVKPPASYASDK 319
+DR+K D + + + ++++K + P PT + +L K+VK +A D+
Sbjct: 282 IDRVKKPNKDAQEEKMRRLAEAEQMSKRRKLNLPSPTVSQDELDKVVK--LGFAGDR 336
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 3.6
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Frame = +2
Query: 257 TFATSKLPKIVKPPASYASDKNIRTKEKVDAGDNFAGTSKRMGSQKSNKNYKLEKSKP-S 433
TF+T KL +VK P D ++ A +K+ +Q S+ E P
Sbjct: 73 TFSTPKLENVVKSPEGQKLITESLINATTDQNESQASQAKQSSAQLSDS----ESGYPLD 128
Query: 434 HIPRRLQEATAKRNSINT---EDIPSFEQTEEKTLA 532
H R+ E + N DI +F +T + +A
Sbjct: 129 HEEMRISEENGPSHIENLNFFSDIDNFSKTSAEEIA 164
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +2
Query: 230 NLNKSSPQPTFATSKLPKIVKPPASYASDKNIRTKEKVDAGDNFA--GTSKRMGSQKSNK 403
+LN S P+ P + A+ AS + + + DN A ++R S S+
Sbjct: 233 SLNSSKPKHALP----PSYISSEAAQASRSSFQVERHRPTPDNSAVIEAARRTYSSISSS 288
Query: 404 NYKLEKSKPSHIPRRLQE 457
+ +K SH+P R E
Sbjct: 289 SSPFKKKTQSHLPNRTTE 306
>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 231
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/66 (24%), Positives = 27/66 (40%)
Frame = +2
Query: 332 KEKVDAGDNFAGTSKRMGSQKSNKNYKLEKSKPSHIPRRLQEATAKRNSINTEDIPSFEQ 511
KE DNF KR+ QK K ++ K ++ + ++ K + E + F Q
Sbjct: 25 KEDESVDDNFPKQFKRLLQQKEYHESKKKEIKKGNLKNKKKKDYGKIQRLPGERLSEFSQ 84
Query: 512 TEEKTL 529
K +
Sbjct: 85 RVNKAI 90
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.6 bits (56), Expect = 3.6
Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Frame = +2
Query: 137 MAEVLDRLKTSKNDQRFPRQKPNTLYDRITKNLNKSSPQPTFATSKLPKIVKPPASYASD 316
+ EV DRLK + R+ +LY + +L S A ++L + +A+
Sbjct: 779 LTEVQDRLKDITDKLASAREDAMSLYGSVVDSLQTQSSDRQTAITELNE------EFATS 832
Query: 317 KNIRTKEKVDAGD-NFAGTSKRMGSQKSNKNYKLE--KSKPSHIPRRLQEATAKRNSINT 487
+ K ++ F + + Q + ++E +SK S + ++E + NSI
Sbjct: 833 SEVDNKISIEETKLKFMNVNSYVMEQYDARKKEIEELESKMSDFDQSVEELQDEMNSIKE 892
Query: 488 EDIPSFEQ 511
+ + E+
Sbjct: 893 DWVSKLEE 900
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Frame = +2
Query: 215 DRITKNLNKSSPQPTFATSKLPKIVKPPASYASDKNIRTKEKVDAGDNFAGTSKRMG-SQ 391
D N ++P P + + I PP + +SD + D F + M S+
Sbjct: 71 DSTNAQSNIATPSPGTVAAAISGIQPPPKTPSSDSPSLENSLSNLNDLFKSRGRHMAFSK 130
Query: 392 KSNKNYKLEKSKPSHIPRRLQEATAKRNSINTEDIPSFEQTEEKTLA 532
N L S+ P A+ + + + ++ F + ++L+
Sbjct: 131 NDGTNLSLPPSRHQSPPPSSVLASQRHHRRHDSELEEFARRASRSLS 177
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 281 KIVKPPASYASDKNIRTKEKVDAGD 355
K++ PPASY S N T + V G+
Sbjct: 264 KVLMPPASYLSSPNQYTLKNVSPGN 288
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 206 TLYDRITKNLNKSSPQPTFATSKLPKIVKPPASYA 310
T D++ + L + SPQ F ++ KI+ PAS++
Sbjct: 261 TELDKLERRLYRPSPQNIFEIFEILKILGIPASFS 295
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 143 EVLDRLKTSKNDQRFPRQKPNTLYDRITKNLNKS 244
E+ +L+ + QRFP + LYDR+ +N K+
Sbjct: 695 EMRHKLRIAALQQRFPVDEWVALYDRLIRNCIKA 728
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 137 MAEVLDRLKTSKNDQRFPRQKPNTLYDRITKNLNKSSPQPT 259
+ LDR +D+ F R++ + + KN N++ P P+
Sbjct: 839 LPSALDRAVLMPSDKNFDREEEDYMRRHGKKNTNRADPVPS 879
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 378 EWAHRNPTKITNSKNQNQVIYRDDYKKRRLKG-IQ*TQK 491
+W + T+I + ++ QVI D KKR+L G IQ ++K
Sbjct: 753 KWMNDYETRIHQNDDEIQVIKNDIEKKRQLLGTIQDSEK 791
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 149 LDRLKTSKNDQRFPRQKPNTLYDRITK-NLNKSSPQPTF 262
++R ++ + ++RF P++LYD ++K +L SS T+
Sbjct: 1 MERQRSEEANRRFKDLNPSSLYDNLSKPDLGGSSELHTY 39
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 296 PASYASDKNIRTKEKVDAGDNFAGTSKRMGSQKSNKNYKLEKSKPSHIPRRLQEATAK 469
PA Y N R +EK + +KR+ ++ + K K S+ PRR + T K
Sbjct: 299 PAVYVL--NQRKEEKKKRAKDDEQYAKRLAKEEEERGKKETPKKASNTPRRNKSNTQK 354
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 508 ANRRENTR*NKKHSKGSTF--DQYSHDESMPQTPK 606
+N + NT+ ++ S+ +F D Y +DE P TPK
Sbjct: 204 SNTQSNTQLSEMESEEKSFNKDVYPNDEYTPFTPK 238
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 669 FVSLIF-VSFICFSRFVFLFKFLRSLRHAFV 580
F SL F + F+C F L+ F+ + HAFV
Sbjct: 14 FESLFFRLFFVCSFFFPLLYSFIFATLHAFV 44
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 25.4 bits (53), Expect = 8.3
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +1
Query: 232 SQ*IEPPTNICNKQATEDRETTCFVCLR*KHKNKRKSRCRRQFCWDQ*ANGLTEIQQKLQ 411
SQ P + + ED E H +KS Q DQ +N +T IQQK+Q
Sbjct: 26 SQSSSKPKKRFDDEEDEDEEENKESLQNDSHSVSQKSSSSSQN--DQGSNKMTRIQQKIQ 83
Query: 412 TRKIK 426
R +
Sbjct: 84 ERNFE 88
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 357 LSPASTFSFVLMFLSEAYEAGGFTIFGSLLVANVG 253
+ A+ S+ L +L+ E+G GS ++NVG
Sbjct: 375 IDAATAASYYLQYLTPLRESGAIGYLGSPAISNVG 409
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 236 NKSSPQPTFATSKLPKIVKPPASYASDKNIRTKEKVDAGDNFAGTSK 376
N+ SP+P A+SKL I K S + ++ + D+ T K
Sbjct: 6 NQKSPKPKVASSKLKNIKKSSKRNNSQSSTEPRKNATSLDSKKTTKK 52
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 8.3
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = +2
Query: 137 MAEVLDRLKTSKNDQR--FPRQK--PNTLYDRITKNLNKSSPQPTFATSKLPKIVKPPAS 304
+A V++++ QR P + P Y T KSSP P T+ +++K
Sbjct: 251 IAAVVEKINYDIRPQRDQIPEENIVPRISYLTSTTTSTKSSPVPESTTTNTTEVLKELND 310
Query: 305 YASDKNIRTKEKVDA 349
+K+ + EK A
Sbjct: 311 IQENKSRKNVEKATA 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,709
Number of Sequences: 5004
Number of extensions: 50756
Number of successful extensions: 207
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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